Pistacia vera (pistachio): 116107844
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Entry
116107844 CDS
T07386
Name
(RefSeq) uncharacterized protein LOC116107844
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116107844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvy03000
]
116107844
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116107844
04121 Ubiquitin system [BR:
pvy04121
]
116107844
Enzymes [BR:
pvy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116107844
Transcription factors [BR:
pvy03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116107844
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116107844
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116107844
Ubiquitin system [BR:
pvy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116107844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
PcfJ
Motif
Other DBs
NCBI-GeneID:
116107844
NCBI-ProteinID:
XP_031249987
LinkDB
All DBs
Position
Unknown
AA seq
1007 aa
AA seq
DB search
MSDKGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAEKDGTEGRCPACRTAY
DKEKIVGMAAKCERMVAEINSERKQKLQKAKPKASEGRMHLSNVRVIQRNLVYIIGLPLN
LADEELLQRMEYFGQYGKVLKVSISRTATGVIQHSANNSCCVYITYTKEEEAIQCIQSVH
CFILEGRPLRACFGTTKYCHAWLRNMPCSIPDCLYLHDFGSQEDSFAKDEIVSACTRSRV
QQIVGATNNMHRRSGDVLPPPADDYINSSLTSTAKPIATNSSNVRLHVICSFFSLENMNI
DNQSKGYCADIGAGKSNSLPAATSWVMRVSASLPPNKNLSGSGQPPNDQPKISNGLQVLK
SDTVSTTRSTHNVKLMEAEANCEVLGSKLNSLELQKEHINGDYQIDLSNRNAEVILGTTP
ATSTTKNHSPYLPSSNGSEAIPLQHKKSLSSPNSVENENHHVIRDIQGLCSGLSSSGLQN
HIKKEYSVPVVNSSSYSHASVNMLESQGSQEDISEQSSESTTSPASNGAPTDFLDFDDRQ
LKSLKGIHHQASMSSSPCSLQNLNQSSYSSWQSGDINSHSNLDAHTGIAPMKYDRVSSPL
ISNGFYNNKVSSFVNLDASVDHSGVFSEVGLGNYLENYDSKPPLHNSVASDVGESSIISK
ILSIDSDSWEDSLTSPSSLVKLLSKNDQQYNSLKIPSLFKESEIRQSRFSFARQDDFSNH
TSDLEQSVRDIRHSVKCHASNDLMKGKDFCRDEYRNIFSSSSSMESENFPGCYSSISSSV
SKAPTSAPPGFAVPSRPPPPGFSSHGTMHKTFDSSVGTSQLLHTSAQPVRSSCRNGDVAF
FDPAIMDVGQGIHAAGIKNVGSEMRQTSSPELNSFDHDARLQLLMRQSISDNQNLQFPNH
LANRFDLANNRFSPPNDTRRISPMLYDQSQPNNPSAFVLSTAQHFRNAHMSSGHLGDWNE
VKSISDLGVSDFMTNGGAGYNNFIPSYEDLKCQISSPSNLYNRGFAM
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaagggagaaaagacatgccctctatgcgctgaggaaatggatttgactgat
cagcaattgaagccatgcaaatgtggttatgagatatgtgtttggtgctggcatcacatt
atggaaatggctgagaaggatggcactgagggtcgctgccctgcatgccgtactgcttat
gacaaagaaaaaattgtggggatggcagcaaaatgtgaaaggatggtggctgaaataaat
tcagagcgtaaacagaaattgcaaaaggcaaagcctaaagcatctgaaggaaggatgcat
cttagtaatgttagagttattcaacggaatctagtgtatataattggattaccacttaat
cttgcagatgaggaacttcttcagcgaatggagtactttggccaatatggaaaggttttg
aaggtgtccatttctcgtacagcaactggggttattcagcattctgcaaacaacagttgt
tgtgtgtacattacatacacaaaagaggaggaagcaattcaatgtattcagtcagtgcac
tgttttatcttggaaggtagacctttgagggcttgttttggaaccacgaagtattgccat
gcttggctaagaaacatgccttgtagcatcccagattgtttgtatttgcatgattttggc
tctcaagaagatagttttgccaaggatgaaattgtttcagcctgtacaaggagtagagtt
caacaaattgttggtgccacaaataatatgcatcgacgctcaggagatgttttacctccc
ccagcagatgattatatcaatagcagcttaacttcaacagccaaacctattgccactaat
tcttcaaatgtaagactgcatgtaatttgctcctttttttccctagaaaacatgaatatt
gacaatcagagtaagggatattgtgcagatattggtgctggaaaatctaattcgcttcct
gcagcaacctcatgggtcatgcgtgtctcggctagtctgccaccaaataaaaatttgtct
ggttcaggtcaacctccaaatgatcagcctaagatatctaatggtctccaagtccttaaa
tcagataccgtaagcaccactagatctacccacaatgtaaagttgatggaagctgaagca
aattgtgaagttcttggttctaagttgaattcattggaattgcaaaaagaacatatcaat
ggtgattatcaaattgatttatcaaatagaaatgcagaagttattttgggtaccactcct
gccacttcaacaaccaagaaccactcgccttatctgccatcttcaaatggcagtgaagca
atacctctacaacataagaaatccctctctagtcctaattctgttgagaatgaaaatcat
catgttattagggatatccagggtttatgctctgggttatcgtcatctggccttcagaat
cacattaagaaagagtactctgttcctgttgtaaacagttcatcttacagtcatgcttca
gtgaacatgcttgaaagtcaaggttcacaagaagatatcagcgagcaatctagtgagtct
acaacatctccagcatccaatggagctccaacagattttttagattttgatgatcgacaa
ttgaagagcttaaaaggcatccatcatcaagcatccatgtcttcctcaccttgttcgctg
cagaatttaaatcagtcaagctatagttcttggcagtcaggtgatataaacagtcatagt
aatcttgatgcacatactggaattgcacccatgaaatatgatagagtttcttctccattg
atatctaatgggttctacaacaacaaagttagtagctttgttaatttggatgcaagtgtc
gaccattccggagtattttcagaggtgggattaggaaactacttggaaaactatgatagt
aaaccacctttacataatagtgttgcttcagatgttggagagagcagcataatatcaaaa
attttatctatagactcagattcatgggaagattcattgacatcgccatccagtttagtt
aagttgttgagcaaaaatgatcaacaatataattctcttaaaatcccaagcttgttcaaa
gaatcagaaatcaggcaatctaggttctcatttgctaggcaagatgatttctccaatcac
acatctgatttggagcaatctgttcgtgatatcaggcattcagtgaaatgtcatgcctca
aacgatttgatgaaaggcaaggatttttgcagagatgaatatcggaatatcttttcatca
agcagctctatggaatctgagaattttcctggctgttattcttccatatcttcttctgtt
tcaaaagctccaacttcagcccccccaggatttgcagtaccaagtaggccaccccctcca
ggtttttcttctcatgggacaatgcacaagacttttgacagttctgtgggtacgagtcag
ttgctacatacctctgcacaaccagttagaagcagttgcagaaatggggatgttgcattt
tttgatcctgcaataatggatgttggtcaagggatacatgcagcagggattaaaaatgta
ggctctgaaatgaggcaaacttcatctccagagcttaattcttttgaccatgatgcaagg
cttcagctgctgatgagacaatcaatttctgataatcagaatctacagtttccaaaccat
ttagcgaacagattcgatttggcgaataatagattttctcccccaaatgatactcgccgt
atttcaccgatgctttatgatcaatcacaacctaataatccatctgcatttgtgctatcg
acagcccaacactttagaaatgcacacatgtcaagtggccatttgggtgattggaatgag
gttaagagcattagtgatctgggtgtgtcagatttcatgacaaatgggggagctggatat
aacaattttattcccagttatgaggatttaaaatgtcagatttccagtcccagtaatctg
tacaacagaggatttgcgatgtga
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