Pistacia vera (pistachio): 116108165
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Entry
116108165 CDS
T07386
Name
(RefSeq) RNA polymerase sigma factor sigC-like
KO
K03093
RNA polymerase sigma-I factor
Organism
pvy
Pistacia vera (pistachio)
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116108165
Transcription machinery [BR:
pvy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
116108165
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
E_Pc_C
Motif
Other DBs
NCBI-GeneID:
116108165
NCBI-ProteinID:
XP_031250296
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MGFRLNLKWVSPFQSNCFTTSSCRLSSASVRGREGSLNSVRLSFLSIISEEASSYSHDPA
KAYARSSAGPQTLENDYSETDKISQKSASQRGQNMCSTSDYGLLMENLYVLESTFADSDV
LRLEREILQQLGRLGALKLFNTCLSRTPKTSSIFNLSDVPAEQTMNGTVENHKGKIIIHS
KRKEKRKSRTERVSEKSSKTSSVSLPSKATCGNLEQRTVSFTKRKSNSRSRRSMIARNEA
EMSKGVKVVANLERIRTTLEEEAGQVLSLSCWAEAAGVSEKVLRQYLCFGWYCRDELLQS
TRSLVLYLARNYRGLGIPLADLVQAGNFGVLQGAERFDHTRGYRFSTYVQYWIRKSISRM
VAQHARGIKIPYTLSRSINKIQKARKALNSSHGKYPEDIEIAKFTGLSLAEIRSASECLR
VVGSIDQKIGDWLNAKYLEFMPDLSINGPEEIVTRQHMKKDIYNLLKNLDSRERQVLMLR
YGLKDHRPRSLEEIGKLFHVSKEWIRRIEKKAMTKLSDEETCRNLSHYLDL
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcagactgaatctcaagtgggtttccccctttcagtctaattgtttcacaact
tcctcttgcaggctctcttctgcctctgttcgaggcagggagggtagcttgaactcagta
aggttgtctttcctgtctataatttctgaggaggcttctagctattctcatgatcctgca
aaagcgtatgctcgttcatctgctggtccacagaccttagaaaatgattactcagaaaca
gataaaatttcgcagaaatctgcgtcacaaagaggccaaaatatgtgcagcacatcggat
tatggtttactaatggaaaatctttatgttttagagtcaacatttgctgattcggatgtg
ttgaggttggaaagagagattctgcaacaattaggaagacttggagctcttaaattattc
aatacttgtctatctaggacaccaaaaacctcaagtatttttaatttgtctgatgttcct
gctgagcagacaatgaatggcacagtggagaatcacaaggggaagataattattcactct
aaaaggaaggaaaagagaaaatcaaggacagaaagagtatcagaaaagtctagtaaaact
tcttcagtgtcattgccttcaaaagccacctgtggaaatttagagcagcgcactgtttct
ttcacgaaaagaaaatcaaactctagaagcagaagatcaatgattgctagaaatgaggca
gagatgtcaaagggggttaaggtggttgcaaacttggaaagaatcagaacaactttggaa
gaagaagcagggcaagttcttagtttgagttgctgggctgaagcagctggagttagtgag
aaggtgctgcggcagtatctgtgtttcggttggtattgcagagatgagctgcttcagagt
acgcgctccttagtgttataccttgcaagaaattacaggggtctaggaataccattagca
gacttagttcaggccggaaattttggtgttctacaaggtgcggagaggtttgaccataca
aggggatacagattctcaacctatgttcagtactggataaggaaatcaatttcaaggatg
gtggcacagcatgcgaggggaatcaaaattccttacacgctaagcaggtcaataaataaa
atacagaaagctcgaaaagctttgaacagcagccatggaaaatatccagaagacattgag
attgccaagttcacaggtctttctttggctgaaatcagatcagctagcgaatgcctgcga
gttgtggggtcaattgatcagaaaataggggattggctgaatgcaaaatatttggaattt
atgcctgatttgtctataaacggtcctgaagaaattgtgacaaggcaacacatgaagaaa
gacatttataatcttttaaagaatttagattcaagggagagacaagtattgatgctaaga
tatgggcttaaggatcatcgccctaggtcgcttgaggagattgggaagcttttccacgtg
agcaaagagtggataaggagaatagagaagaaagccatgacaaaattatcggatgaagaa
acctgcagaaatttaagccattatttggatttgtag
DBGET
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