Pistacia vera (pistachio): 116108828
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Entry
116108828 CDS
T07386
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116108828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116108828
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116108828
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116108828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
116108828
NCBI-ProteinID:
XP_031250922
LinkDB
All DBs
Position
Unknown
AA seq
194 aa
AA seq
DB search
MGQEEMVTPGEVLGKATEVKAGKGTYVAKHNGFVYASLTGLLRTVSPPPESPDQRPTVEV
TGHKAHGAVPEPGSVVIARITKVMARMASADIMCVGPKSVREKFTGTIRQQDVRATEIDK
VDMHLSFRPGDIVRALVLSLGDARAYFLSTAKNELGVVSAESAAGGTMVPISWMEMQCPL
TGQIEQRKVAKNES
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggggcaagaagagatggtaacaccaggagaggtattgggtaaagctacagaagtcaag
gcaggaaagggaacctacgtcgccaaacacaacggcttcgtctacgcttccctcactggt
cttctccgtactgtatcccctcctcctgaatctccagaccagcgaccaacagtggaagtt
acaggtcacaaagcccatggtgctgttccagagcctggttcagtcgtaattgcccgtatt
actaaagtgatggccaggatggcttcggctgatatcatgtgtgttggccccaagtctgtg
agagagaaatttactggcacaatcaggcagcaagatgttagagcaactgagattgacaaa
gtagatatgcatttgtcatttcgtcctggtgacattgtcagagctctggttctgtccctt
ggagatgcacgggcttatttcctttctactgcaaaaaacgaacttggtgttgtttcagcg
gagagtgcggcaggtggaacaatggttccgataagttggatggagatgcaatgcccattg
acaggacaaatcgagcaaagaaaggttgctaagaatgagagttga
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integrated database retrieval system
