Pistacia vera (pistachio): 116109088
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Entry
116109088 CDS
T07386
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116109088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116109088
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116109088
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116109088
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
DUF499
Motif
Other DBs
NCBI-GeneID:
116109088
NCBI-ProteinID:
XP_031251194
LinkDB
All DBs
Position
Unknown
AA seq
666 aa
AA seq
DB search
MSGLLNSSLNGSASNIPDGTGRSFATSFSAQSGAASPVFHHTGTIQGLHNIHGSFNVPNM
PGTLTSRNSTMNNVPSGGVQQPSGSLSSGRFASNNLPVALSQLSHGSSHGHSGVTNRGGM
SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPILGNTGPRITSSMGNMVG
GGNIGRSISSGGGLSVPGLASRLNLSANSGSGNLSVQGQNRLMSGVLPQGSPQVISMLGN
SYPAGGGPLSQSHVQVNNLSSMGMLNDVNSNDNSPFDINNDFPQLTSRPSSAGGPQGQLG
SLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHENTMSMMQSQ
HFSMGRSAGFNLGGTYSSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHS
TYHSQTSGPPGIGLRPLNSANPVSGIGSYDQLIQQYQQHQNQSQFRLQQMSAVNQSFRNQ
DIKSMQSPHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSAENLHKTFGSP
WSDEPAKGDPEFTVPQCYYAKQPPVLHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELY
NRNWMYHKDHRYWFIRVPNVEPLVKTNTYERGSYHCFDPSTFEIVRKDNFVVYYEMVDKR
PALPQH
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctcaatggatcggcttctaatattccagacggtact
gggcgatcatttgccacatctttctctgcacagtctggtgcggcttcccctgttttccat
cacactggaactattcaggggcttcataacattcatgggagctttaatgttcccaatatg
ccgggcacacttacttcaagaaactcaacaatgaataacgttccatctggtggggttcaa
caacctagtggaagcctttctagtggaagatttgcatcaaataatcttcctgttgctcta
tcccagttatctcatggaagctctcatggacattcaggagtcacaaacagagggggtatg
agtgttgttgggaaccctggatttagtagtaacacaaatggagttggtggttctattcct
gggattctcccaacctctgcggcaattggtaaccggaatgctgttccaggattgggagta
tccccaattttgggaaatacaggtcctcggattacaagttcaatgggaaacatggttggt
gggggtaacatcggaaggagcataagctctggtggtggattatctgtacctggtcttgca
tctcgtttaaatctatctgcaaatagtggatctggaaatctgagtgtgcaaggacaaaat
aggttgatgagtggtgtgcttccacaaggatctccacaggtcatttctatgttaggaaat
tcctatcctgctggtggtggtccactttcccaaagtcacgttcaagtgaacaatctaagt
tctatgggaatgttgaatgatgtgaactcaaatgacaattctccatttgatataaataat
gatttcccgcagttgacaagtcgtcctagttctgcaggaggccctcaaggtcaattgggt
tcactaaggaaacaaggtcttggagttagtcccattgttcaacaaaaccaagagttcagc
atccaaaatgaagattttcctgctttacctgggtttaaaggcggtaatgctgactatgct
atggatttgcatcagaaagaacaacttcatgaaaacaccatgtcaatgatgcaatctcag
cacttctctatgggcagatctgctgggtttaatttaggtggaacctactcttctcatcgt
ccacagcagcaacagcaacatgctccatctgttagtagtagtggtgtctccttttcatcc
gttaacaaccaggatcttctccatttacatggttctgatatgttcccatcttcacattcg
acctaccattcacagaccagtggaccacctggcattggactaagacctttgaattctgcc
aatccagtttctggtattggctcgtatgaccagcttattcagcagtatcagcaacatcag
aaccaatctcaatttcgcctacaacagatgtctgctgtcaatcagtcatttaggaatcag
gatataaaatccatgcagtcaccacattcaactcctgatccatttggcttgcttggcttg
ttaagcgtgataaagatgagtgatcctgatctgacttcgcttgcacttggaattgacctg
acaacacttggattgaacttgaattcagcagaaaatcttcataagacgtttggttcacca
tggtctgatgaaccagccaagggcgacccagagttcactgtgccacaatgttattatgct
aaacaaccacctgtgctacatcaaggttacttttcaaagttttcagtggaaacattgttc
tatatattttacagcatgccaaaagatgaggcccaattatatgctgcaaatgaactttat
aatagaaattggatgtatcacaaggatcatcggtattggttcatcagagtacctaatgtg
gagccacttgttaagacgaacacatatgagcgagggtcttatcactgttttgatccaagc
acatttgaaatagtccgcaaggataattttgttgtgtattacgaaatggtggataagaga
ccagctttaccgcaacattaa
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