Pistacia vera (pistachio): 116109633
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Entry
116109633 CDS
T07386
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116109633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116109633
Enzymes [BR:
pvy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116109633
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116109633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
116109633
NCBI-ProteinID:
XP_031251717
LinkDB
All DBs
Position
Unknown
AA seq
1736 aa
AA seq
DB search
MNPTSEVATEAVKAVWFSLLTDEEVRKHSFLKITEPQLLDQLDRPLPGGLYDPALGSLDE
TSPCKTCGQRQFHCPGHFGHIDLVFPVYNPLLFNFLYNLLQRTCFFCNHFTAGRSEVEKC
VSQLELIIKGDIVAAKRLDSVDESSNPEDSDGSHKSCSTVHSGARYDNVNHLKQQEWTSL
QSSEAKSVLQNFLKIKPKKCRNCKAKNPSISKPTFGWIHMSGMSRALIRENIIRGCTIGE
SFAGETEPDGEDSSDVDTAETPAFGDASRGTQDTTGRRHQKVSGQVPAEFKNQKDLFSGP
LLPSEAKNIVKNLWENEVELCSFITDMQQQGFGKRAGHCIFFLETILVPPIKFRLPSKGS
DSVMEHPQTILLSKVLQCNIYLGNAYVNKSEHSKTIARWMDLQQSINVFFDGKTATGQGQ
KDLASGICQLLEKKEGLFRQKLMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE
RVTPWNVLKLRDAIINGSENHPGATHYVDQFNTMRLPLSRKQRVSISRKLPSSRGSVVQA
GKDSEYELEGKTVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY
NADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVRPSNGDPLRALIQDHIVSAVLLTKKD
TFLNIDEFNQLLYSSGVFTSGLGSFSSKPDQKVSILSSEEEVLLLQPTIWKPEPLWTGKQ
VITAVLNHITKGHPPFTVQRDGKIPQDFFKTRPNEGQWSDKKRNDKGKLSTKNKMGKAKQ
NKEIEVGENKPIDVKEADKNISKRNELNEEKLLIYKNDFVRGVIDKAQFADYGLVHTVQE
LYGSNTAGILLSALSRIFTVFLQLHGFTCGVNDLLIRDEKDRERKKQLEGCEKIGKEIHL
KALQHEDDADVKDDIEVKDGDEIDPIKLTLKIEKTIRSGGEAAIAYFDRQMTGALNKCTS
SGVINELLSEGLVKPTGKNCISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK
TLPSFHPWDWTPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI
KNLECLKICYDHTVRDADGSIVQFLYGEDGVDVHQTSFITKFEALAANQDMIYKKCGDQL
DASNGYIMGLPDALKDKAEKFVDEFPLKERIFSNLMKQQDFLKLLKHKFILSLAQPGEPV
GLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVMTCPLHVG
KTEDDAKRLGDKLKKITVADIVDSMEVSVMPFAVHDEQTCSIYKLKMKLYEPKHYPKNTN
ISVKDWEETLEVAYVRELEDAIQNHMVLLSKISGIKDFAAGLSPKASNEKDEEVSVSRSK
NKSENDDDADDEDGVEAEDLGLDAQKRKQQATDERDYEEDSEEELNEGASSAGFVSEIDQ
AENDDDDEHDESENEIDQAENENEISKDETSESLSLLEEPPTPSSSKKKAKSEVKRKKKA
RAKLVKKETDRAIYVAAKGYHFEVHFKFINEPHILLAQIAQNTAKKVAIQSSGKIEQCRV
TNCKENQVIYYGKDPKKRVKMEPEEKEKIPAISTAGVDFNALWKLQDYLDIRYLYSNNIQ
AMLETYGVEAARETIIGEINHVFNSYGISVNIRHLSLIADFMTHSGGYRPMSRLGGIAES
VSPFSKMTFETASKFIVEAAYYGEVDKLETPSARICLGLPVKVGTGSFDLMQKLEI
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaacgtcagaggttgcgacggaggctgtgaaagcggtttggttcagtctttta
acagatgaagaagttcggaaacatagttttcttaagatcacagaaccccaattattggac
cagcttgatagacccttgcctggtggattgtatgatcctgctttgggctctttagatgag
acttcaccttgcaaaacttgtggccaacgtcaatttcattgcccaggtcattttggtcat
attgaccttgtttttccagtttataatcccttgctgttcaattttctttacaaccttcta
cagaggacctgtttcttttgcaatcattttacggcaggcaggagtgaggttgagaaatgt
gtgtctcaattggaactcatcataaaaggagatattgttgctgccaaaaggttagactca
gtagatgaatcctcgaatccagaggatagtgatgggagccataaatcatgttctacggtt
cactctggtgcacgatatgacaatgtcaatcatttaaagcagcaagagtggacatctctt
cagtcttctgaggcaaagtcagttttacagaattttctgaaaatcaaacctaaaaagtgt
cggaactgcaaagcaaaaaatccttctatcagcaagcctacttttggatggattcacatg
agtggtatgtcacgtgcccttattagggaaaatattattagaggctgcacaattggagag
tcatttgctggtgagacagaacctgatggagaagattctagtgatgttgatactgctgaa
acacctgcatttggtgatgcctcccgtggaacccaagatacgaccggaagaaggcatcag
aaagtttctgggcaagtgcctgctgaattcaaaaaccaaaaggatctattttctggacct
ttgttgccatcagaggctaaaaatattgtgaagaatttgtgggagaatgaggttgaactt
tgctcattcatcactgatatgcagcagcaaggatttggaaagagagcaggtcactgtata
ttcttcttagagaccattcttgtacctccaataaaattccgcctcccttctaaggggagt
gattctgtgatggagcatccacaaactattttgctgagtaaggttctgcaatgcaatata
tatttgggaaatgcttatgttaacaagtcagaacactcaaaaacaattgctcggtggatg
gatcttcagcaatccattaatgtattttttgatggcaaaactgccacaggtcaaggtcaa
aaagatttagcttcaggaatatgccagttgctagaaaaaaaggaaggcttatttcgtcag
aagttgatgggaaagagggttaactttgcgtgccgttctgtcatttctcctgatccttat
ttagctgtgaatgagattggaattcctccatattttgcgctaaggctaacctatcctgag
agagtgactccttggaatgttttaaagttgagggatgcaattatcaatggctctgagaat
catcctggagctacacactatgttgaccagttcaatactatgagactgccgctgagcaga
aaacagcgtgtttccatatcaagaaaactaccttcatcaagaggttctgtcgtgcaagct
ggcaaggactctgaatatgaattggaaggtaaaacggtatatcgacacttgcaagatgga
gatgttgtgcttgtcaatcgacagccaacgctacacaagcccagtataatggcacatgtt
gttcgagtgctcaagggggagaagacacttcggatgcactatgcaaattgcagcacttat
aatgctgattttgatggtgatgaaatgaatgttcattttcctcaagatgaaatttctcgt
gctgaagcttataacattgtcaatgcgaataatcaatatgttagaccttccaatggtgat
ccacttagagccttgattcaggatcatattgttagtgcagtgctccttacaaaaaaggat
accttcttaaatattgacgagtttaatcagcttctgtatagttctggtgtgtttactagt
gggctgggttctttttctagcaagcctgaccagaaagtttctatattaagttcagaagaa
gaggtgctgctccttcagcctacaatatggaagccagagcctctttggacaggaaagcag
gtcattactgccgtgctaaatcatattacaaaggggcaccccccatttactgttcaaaga
gatgggaaaatcccacaagattttttcaagactagacctaatgaaggtcaatggagtgac
aaaaagaggaatgacaaaggcaaattgagcacaaagaataagatgggtaaagctaaacaa
aataaagaaatagaggttggtgaaaataaacctattgatgttaaagaggctgacaagaat
atatcaaagagaaatgagcttaatgaagaaaaacttttaatctataaaaatgacttcgta
cgtggtgtgattgacaaggcccaatttgccgactatggtttggttcatacagtgcaggag
ctgtatggatcaaatacagcaggcattttgctttctgcattgagccgtatattcactgtt
tttctgcagttgcatggctttacttgtggagtaaatgatcttttgataagggatgaaaaa
gacagagaaaggaagaagcaacttgaaggttgtgaaaaaataggcaaagaaattcatctg
aaagctcttcagcatgaggatgatgctgatgtcaaggatgatattgaagttaaggatggt
gatgaaattgaccctataaaattgacgttgaaaatagaaaagactatacgtagtggtgga
gaagccgctatagcttactttgataggcagatgacgggtgcactcaataagtgcacaagc
tctggtgtcatcaatgagttgttatctgaaggattagtaaaaccaactggaaagaattgt
atatctcttatgacaacatctggggctaaaggtagtaaggttaattttcagcaaatatct
tctcatttgggtcaacaagaattggaaggcaaacgtgtccctcgaatggtttctggaaag
acgttacccagctttcatccatgggattggacacctcgggcagggggctttattattgat
cgatttcttactggtcttcgccctcaagaatattacttccattgcatggctggtcgtgaa
gggttggttgatactgcagtcaaaacatctcgcagtggatacctgcaaagatgcctaata
aaaaatcttgagtgcctgaaaatttgttatgatcatactgttcgtgatgccgatggttcc
attgttcaatttctctatggagaagatggtgtggatgtccatcaaacaagctttatcaca
aaatttgaagctctggcagcaaatcaagatatgatttacaaaaaatgtggtgatcagctt
gatgcatcaaatggttatattatgggtttgccggatgctcttaaggacaaagctgagaag
ttcgttgatgaattccccttgaaggaacggatattttctaatttaatgaaacaacaggac
ttcttgaaattactgaagcacaagttcatcctaagtcttgcccagccaggagaaccagtt
ggcctgctggcttctcaatctgtcggagaaccttctacacagatgacgttgaatacattt
catcttgctgggcgaggtgaaatgaatgtcacgcttggaattccacgtttgcaagaaatt
ttgacaattgcttcaaaggatattaagactccagtaatgacatgccccttgcatgtgggg
aaaacagaggacgatgccaaacgtcttggtgacaagttgaaaaaaataacagtagcagat
atagttgacagtatggaagtatctgtcatgccatttgctgtccatgatgagcagacatgt
agtatttataagctcaaaatgaagctttacgaacctaaacattatccgaaaaacaccaat
atctctgtgaaagactgggaagaaactttagaggttgcatatgtcagggagttggaggat
gccatacagaatcatatggttttgctctccaaaattagtggcataaaagatttcgccgca
ggtttgtcaccaaaggcttcaaatgagaaggacgaagaagtttctgttagcagatcaaaa
aataagagtgaaaatgatgatgatgcagatgatgaggatggtgtagaggctgaggatctt
gggttggatgcacaaaagcgaaaacagcaggctacagatgagagggattatgaggaagat
tctgaagaggaactgaatgaaggggcttcatcagctggatttgtaagtgaaattgatcag
gcagagaatgatgatgatgatgaacatgatgagagtgaaaacgaaattgatcaggctgaa
aacgagaatgaaattagtaaggatgaaacctctgaaagtctgtcactccttgaagaaccc
cctacgccaagttcaagcaagaagaaggccaaatcagaggtcaaacgaaagaagaaggct
agagcaaaattagtgaagaaggaaacagatagagcaatatatgtggcagcaaagggatac
cacttcgaggttcattttaaatttataaatgaacctcatattttactcgctcagattgca
cagaatacagccaagaaggttgccatccagagctctggaaagatagaacagtgtagggtt
actaactgcaaagaaaatcaagtgatttactatggaaaagatcccaaaaaaagggttaaa
atggagcctgaagaaaaagaaaaaattccggcaatcagtacagcaggagtagatttcaat
gcattatggaaattacaagattatcttgatatcaggtacttatactccaacaacattcaa
gcaatgctagaaacatatggagtggaagcagcaagagaaaccatcattggggagataaat
catgttttcaattcttacggaatatctgtcaatattcgccacctaagtctgattgccgac
tttatgacccattcgggtgggtatcgaccaatgagccgacttgggggcattgcagaatca
gtatcgccttttagtaaaatgacttttgagacagcttcaaagtttattgttgaggcagca
tattatggggaggtggacaagttagagactccatctgctaggatctgtctaggcttgcca
gtgaaggtgggtactggatcttttgatttgatgcaaaaattagaaatttga
DBGET
integrated database retrieval system
