KEGG   Pistacia vera (pistachio): 116110526
Entry
116110526         CDS       T07386                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
pvy  Pistacia vera (pistachio)
Pathway
pvy03018  RNA degradation
pvy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116110526
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116110526
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvy03019]
    116110526
   03041 Spliceosome [BR:pvy03041]
    116110526
Messenger RNA biogenesis [BR:pvy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116110526
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116110526
Spliceosome [BR:pvy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116110526
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 116110526
NCBI-ProteinID: XP_031252590
LinkDB
Position
Unknown
AA seq 98 aa
MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSSLDLSNLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcaagtggccctggacttgaatctcttgtagatcagacaatatcagtcatcacaaat
gatggacgcaacatagtgggaattttgaaaggatttgaccaggccactaatataatcctt
gatgaatctcacgagcgtgtttactctactaaggaaggtgttcagcaacttgtgttagga
ttgtacataataaggggcgacaacataagcattgttggagaacttgatgaagaactggat
tctagtctagacttgtcaaatttgagggcacatcccctcaaacctgttatccattaa

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