Pistacia vera (pistachio): 116110802
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Entry
116110802 CDS
T07386
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
116110802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116110802
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
116110802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
116110802
NCBI-ProteinID:
XP_031252874
LinkDB
All DBs
Position
Unknown
AA seq
952 aa
AA seq
DB search
MRTRHNSKTQNASSGNENAMRAVTGSEGGSRVGSRKESGTLAETSREAVGKLLRRRANAR
GSKGSEKKDNPVGTAKSGTKVHENQVLDKRVTWNDVDAGGCSKDAIGNSSMEVDEERIER
LQDNLLDKSEEMDDSDWEDGSIPVNHSTENDPESHIKGVTIEFDAEDSARRKPVRRATAE
EKELAELVHKVHLLCVLARGRIIDGACDDPLIQASLLSLLPAYVFKVSEVSKLTARALSP
IVNWFHDNFHVRNSDSTGRSFPSALAYALENREGTAEEIAALSVALFRALKLTTRFVSIL
DVSSLKPEADKNESSSLDGGRSGGIFGSPTLMVSRPKEVALSLDKLISCDKKENVCEISS
RGLSKCKNSNPTSYNTQSKKSAIPDELNDRASDSLSCDAHCDTSEACHSKESQGLKRKGD
LEFETQLHMALSATAAGNCKSNLGSDEKNLNSDENVSSPFKRMKKIENIESSTSHEGIST
AVGSRKVGSPLYWAEVYCSGENFTGKWVHVDAANAIIDGEQKVEAAASACKIALRYVVAF
AGHGAKDVTRRYCMKWHKIASKRVNPGWWDAVLAPLRGLESGATGGTMHMEKNHGNSAGN
SGHNVESSVAARNSLEDMELETRALTEPLPTNQQAYRNHQLYAIERWLNKYQIIHPKGPV
LGFCSGHPVYPRTCVQTLKTKERWLREALQVKANELPVKVIKNSTKLKKGQVYEAEDHDE
VDSKGNIELYGKWQLEPLRLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLGLPRIFSVA
KRLEIDYAPAMVGFEFRNGRSTPVFDGIVVCSEFKDIILEGYAEEEEKRVAAEKKRKEAQ
AISRWFQLLSSIVTRQRLNNCYGDGSSSQTSSAIQNIKNNESNLRVGDSQDDKQSQECRK
VDTRDAKLDAALVVVTAEHEHDYLIEDQSFDEENSVRTKRCHCGFTIQVEEF
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccagacacaattccaagacacaaaacgcctcttcaggtaatgagaatgcaatg
agagcagtgacaggttcagaaggcgggagtcgtgtagggtcacggaaagagagtggaacc
cttgctgagacatcaagggaagcagtagggaaacttcttcgacgacgtgctaatgctcgg
ggctcgaaggggtctgagaaaaaagataaccctgttggcacggcgaagagtggaactaaa
gttcatgaaaatcaagttttagataaaagagttacatggaatgatgtggatgccggaggg
tgcagtaaagatgcaataggcaactcgtcaatggaagttgatgaggagagaattgaaaga
cttcaggacaatcttttggacaaaagcgaagaaatggacgactcagattgggaagatggt
tcaattcctgtaaaccattccacggaaaatgatccggaaagtcacattaagggggtcact
attgaatttgatgcagaggattctgctagacggaagcctgttcgtcgagctactgctgaa
gagaaggaattggctgagcttgtgcataaggtccatctactctgcgtacttgcaaggggc
aggataattgatggtgcttgtgatgatcctcttattcaggcttctctactttctcttctg
ccagcatatgtgttcaaagtatcggaggtctcaaaacttacagctagagctttatctccg
attgtcaattggtttcatgacaactttcatgttagaaactcagatagcacagggagatca
tttccttcagctttggcctatgctcttgaaaatcgtgaaggcactgcagaggagattgcg
gcattgtctgtggcattatttagagctttgaagcttacaacccggtttgtgtctattctg
gacgtttcctccttaaaacctgaggctgataaaaatgaatcttcaagtctagatggtggc
agaagtgggggaatattcggttctccaactctgatggtaagccgaccaaaagaagttgct
ttgtctttggataaattaatttcctgcgacaaaaaagagaatgtatgtgaaatttcttca
aggggtttatccaaatgtaagaatagcaacccaacaagctacaatactcaatccaaaaag
tctgccatacctgatgagttgaatgatagagcttcggattcattgtcgtgtgatgcacac
tgtgatacctctgaagcatgccatagcaaggaatctcagggtttgaagaggaagggggat
cttgagtttgagacgcagttgcacatggctctttctgcaacagccgcggggaattgtaaa
agtaacttagggtctgatgagaagaacctgaatagtgatgaaaatgtctcttctccattc
aaaagaatgaaaaagattgaaaatatagaatcctcaacttctcatgagggaatatccact
gcagttggatcgagaaaagtaggatctcctctgtattgggcagaagtatactgtagtggt
gagaattttacaggaaaatgggtacatgttgatgctgccaatgcgatcattgatggagag
cagaaggtagaagctgcagcttctgcatgcaaaatagctttgagatatgtagttgctttc
gctgggcatggagcgaaagacgtgacccgcagatactgtatgaagtggcacaagatagca
tcaaaacgagttaatcctggctggtgggatgcagttttggcaccgttgagagggttagag
tctggagcaactggaggtacgatgcatatggaaaaaaatcatgggaactcggctggaaat
tctggccataatgtagaatcttctgttgctgccaggaactcacttgaggatatggaattg
gaaactagggcactaactgagcctcttcccactaatcagcaggcctacagaaaccatcaa
ttatatgctattgaaagatggcttaataagtatcagataattcatccaaagggccccgtt
cttggattctgctctggtcatccagtttatcctaggacttgtgtgcaaacactcaagaca
aaagaaagatggctgcgggaagcactacaggttaaagccaatgagcttcctgtgaaggtg
ataaagaattctacaaaacttaagaaaggacaggtttatgaagctgaggatcatgatgaa
gttgattctaaaggaaatattgaactttatgggaagtggcaactggaaccgttgcgtcta
cctcatgctgtcaatggcattgttccaaagaatgagcgtggtcaagtcgacgtgtggtct
gagaagtgccttccaccagggacggtacacttagggttgcctaggattttctctgtggcc
aagaggctggaaattgattatgcacctgccatggttggttttgaattccgaaatggtcgt
tctactcctgtctttgatggtattgtggtctgctctgagttcaaggatataatattagag
ggatatgcagaagaagaggagaaaagagtagccgcagagaagaaaaggaaggaagcacaa
gctatttctaggtggtttcaacttttatcttccattgtaactcgacaaaggttaaacaac
tgctatggggatggttcatcttcacaaacatccagtgccatacaaaacataaagaataat
gagtcaaatcttcgggttggtgatagtcaggatgataagcaatctcaggagtgccgtaaa
gtagatacacgggacgccaaactagatgctgctttggtggtagtaacagcagagcatgag
catgattatttgatagaggatcagagttttgatgaagagaactctgtgcggacgaagcgt
tgtcattgtggctttacaatccaagttgaggagttttag
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