Pistacia vera (pistachio): 116111955
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Entry
116111955 CDS
T07386
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03013
Nucleocytoplasmic transport
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116111955
03015 mRNA surveillance pathway
116111955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116111955
03041 Spliceosome [BR:
pvy03041
]
116111955
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116111955
Spliceosome [BR:
pvy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
116111955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
116111955
NCBI-ProteinID:
XP_031253974
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAAELEHLVDMTKVKMDVIRPWIANRVTELL
GFEDEVLINFIYGLLDGKEVNGKQVQISLTGFMEKNTGKFMKELWTLLLSAQKNASGVPQ
QFLDAKEEETREKKLEADRIANEIQKKKEKESRERDQERLKKMDGAVEMKAAADALDPNT
KTMLAKDASIRSEDGKGPGERNGVRGRSRVSRSPQSAGHSPSPHRGSPSRSVSKSHSNSR
DYSGGRRKSRSMSRSPNARRRSISSDRVHHSLRRRSITPRRRHSPRFSPSPRRRPSYLRR
RSRSRSLRRSPSPFRRRLHSPFRRKSPSPMRRRSPSPVRRRRSPSPIRRRRSPSPVRRRR
SPSPVRRRRSPSPIRRRRSPSLIRRRRSPSPIRRRRSPSPIRRRRSPSPIRRRRSPSPIR
RRRSPSPMGSESLSPVQRGSPSPVRRRSPSPVHRTSLSPVRRRYQRSPLTPQHRSTSPIH
QRSPVPARMRPQTPSRHRSPSPYESSSPSPPRRRTLSPIKRKSPNDYRRSPVQSPGEKIR
VCESFSPAARRRSSSLRSPPGESKNRNDLRKMSAFSPSPERSPTVSESPPRATRKRSASE
DRRSLSPYESPGRQTWHARIHYGSLSPPQKPREKPRQGGPDTSKEEKDTNRTRDHKSVSS
RRSMQKEEYSPDRVASDRHPPESRSQPDKIDLRKKNQDLKSEKSSGRGDRPQTFDQERSP
TLPGERQQSSYPGESKKSDERNHSRSSNGKESDQRRKSANATMVVEKVDHGNRSDSVDSG
SEESYKHRADNKEKRKHKYEREEVASDDDYSYDSETERKHAKRRRKEEKKLRKEEKRRRR
DERRRRKEERRAEKHKLKNRNDADGSDGEHISRRESHPSDDEVTESEQKRLEIELRNKAL
ESIKAKKINSR
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggattcttcaggggcacctcggccgatcaagatacgcggttctcgaacaag
caagcgaagctcatgaaatcgcagaaattcgccgctgaactggaacatctggtggacatg
acaaaagtgaagatggatgttattagaccgtggattgctaatagggttactgagctactt
ggctttgaagatgaagttctcatcaacttcatttacggccttcttgatggaaaggaggtg
aatgggaaacaggtgcagatatcacttactggtttcatggagaaaaatactggaaagttt
atgaaagagctttggacgcttctcctcagtgcgcaaaagaatgctagtggagttcctcag
cagttcttggatgccaaggaagaagaaacaagggagaaaaagttggaggcagataggata
gcaaatgaaattcagaagaagaaagagaaggaaagtagagaacgtgaccaagagagattg
aagaagatggacggtgcagttgaaatgaaggctgctgcggatgctttggatccaaacaca
aagactatgctggcaaaggatgcaagtatccggtctgaggatgggaaaggacctggcgag
aggaatggtgtgagaggaaggagcagggtttctaggtctccacagtcggctggtcattcc
ccttcacctcatcgaggttcaccttccaggtctgtcagcaagtctcattccaattccaga
gattattcaggtggcaggcgcaagtcaaggagtatgtctagatcacctaatgcacgaagg
cgctctatttcttctgacagggtgcaccactctttgagaagacggtcaattacacctcgt
aggaggcattcacctcggttctccccctctcctagacgaagaccatcttatttaaggcga
agatctaggtcacgatcgcttcgcagatcaccatctccctttcggcgtagattgcattca
ccttttcgacgcaagtcaccctcaccaatgcgtcgtagatcaccatctcctgttcgtcgc
cgtagatcgccatctcctattcggcgtcgtaggtcgccatcaccagttcggcgtcgtagg
tcgccgtcaccagtgcgacgccgtaggtcgccatcacctattcgacgtcgtaggtcaccg
tcacttattcgacgtcgtagatcaccttcacctattcggcgtcgtagatcaccttcacct
attcggcgccgtagatcaccttcacctattcggcgccgtagatcaccttcacctattcga
cgacgtagatctccttcacccatgggaagtgaatccctttcacctgtgcagcgtggatcc
ccttctcctgtgcgtcgtaggagcccttcacctgtgcatcgtacgtcactctctcctgtg
cgacggcggtatcaaagatctcctttgactccgcaacatcgatctacatctcccatacat
caaagatcacctgttcctgcccgcatgagaccacagactccttcccgtcataggtctcct
tcaccctatgaatcaagttctccatctcctccacgacgtaggactctatctccaatcaag
aggaaatctcccaatgactataggagatcacctgtgcaatctcctggagagaaaattaga
gtctgtgagagtttttctcctgctgcacgtcgacgttccagctctctgaggtcaccacct
ggagaatcaaagaatcggaatgatttacgtaagatgtcagctttttcaccatcaccagag
aggtctcctactgtatcagagtcccctccacgtgcaacaaggaaaaggagtgctagtgaa
gataggaggtcattaagtccatatgaaagtcctggcaggcagacctggcatgcaaggatt
cattatggcagcttgagtcctccacaaaaaccaagagaaaaacctcgtcaaggtggtcca
gatacaagtaaagaagaaaaagataccaatcgtactagggatcataaatccgtgtcatca
cgtagatctatgcaaaaggaagaatattctccagacagggtagcatcagatcgtcatccc
cctgaatctaggagccaacctgataagatagatctgaggaagaaaaaccaggatttaaag
agtgaaaaatcctctgggaggggtgatcgtcctcaaacttttgatcaagaaaggtcacca
accttgcccggtgagaggcaacagtcatcgtacccaggagaaagtaaaaaatctgatgag
agaaaccactctcgttcaagtaatggcaaggaaagtgatcaacggcgtaagtcagcaaat
gcgacaatggtcgttgaaaaagtggatcatggcaaccggagtgatagtgttgattctggt
tctgaggaaagttacaaacacagagctgacaataaggaaaagagaaagcataaatatgag
agggaagaagtggcttcagatgatgactacagttatgattctgaaactgagaggaagcat
gctaagaggaggagaaaggaagaaaagaaattaagaaaagaggaaaagcgtcgacggcgt
gatgagagacgtcgtagaaaggaagagcgacgtgcagagaagcacaaattgaaaaatcga
aatgatgctgatggttcggatggagaacatatttctagaagggagtctcatccaagtgac
gatgaagtgacagaatctgaacagaaaaggcttgagattgagttacgaaataaggctttg
gaatccattaaagcaaagaagatcaacagtcgctaa
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