Pistacia vera (pistachio): 116111956
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Entry
116111956 CDS
T07386
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03013
Nucleocytoplasmic transport
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116111956
03015 mRNA surveillance pathway
116111956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116111956
03041 Spliceosome [BR:
pvy03041
]
116111956
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116111956
Spliceosome [BR:
pvy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
116111956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
116111956
NCBI-ProteinID:
XP_031253980
LinkDB
All DBs
Position
Unknown
AA seq
872 aa
AA seq
DB search
MTKVKMDVIRPWIANRVTELLGFEDEVLINFIYGLLDGKEVNGKQVQISLTGFMEKNTGK
FMKELWTLLLSAQKNASGVPQQFLDAKEEETREKKLEADRIANEIQKKKEKESRERDQER
LKKMDGAVEMKAAADALDPNTKTMLAKDASIRSEDGKGPGERNGVRGRSRVSRSPQSAGH
SPSPHRGSPSRSVSKSHSNSRDYSGGRRKSRSMSRSPNARRRSISSDRVHHSLRRRSITP
RRRHSPRFSPSPRRRPSYLRRRSRSRSLRRSPSPFRRRLHSPFRRKSPSPMRRRSPSPVR
RRRSPSPIRRRRSPSPVRRRRSPSPVRRRRSPSPIRRRRSPSLIRRRRSPSPIRRRRSPS
PIRRRRSPSPIRRRRSPSPIRRRRSPSPMGSESLSPVQRGSPSPVRRRSPSPVHRTSLSP
VRRRYQRSPLTPQHRSTSPIHQRSPVPARMRPQTPSRHRSPSPYESSSPSPPRRRTLSPI
KRKSPNDYRRSPVQSPGEKIRVCESFSPAARRRSSSLRSPPGESKNRNDLRKMSAFSPSP
ERSPTVSESPPRATRKRSASEDRRSLSPYESPGRQTWHARIHYGSLSPPQKPREKPRQGG
PDTSKEEKDTNRTRDHKSVSSRRSMQKEDYSPDRVASDRHPPESRTQPDKIDLRKKNQDL
KSEKSSGRGDRPQTFDQERSPTLPGERQQSSYPGESKKSDERNHSRSSNGKESDQRRKSA
NATMVVEKVDHGNRSDSVDSGSEESYKHRADNKEKRKHKYEREEVASDDDYSYDSETERK
HAKRRRKEEKKLRKEEKRRRRDERRRRKEERRAEKHKLKNRNDADGSDGEHISRRESHPS
DDEVTESEQKRLEIELRNKALESIKAKKINSR
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagtgaagatggatgttattagaccgtggattgctaatagggttactgagcta
cttggctttgaagatgaagttctcatcaacttcatttacggccttcttgatggaaaggag
gtgaatgggaaacaggtgcagatatcacttactggtttcatggagaaaaatactggaaag
tttatgaaagagctttggacgcttctcctcagtgcgcaaaagaatgctagtggagttcct
cagcagttcttggatgccaaggaagaagaaacaagggagaaaaagttggaggcagatagg
atagcaaatgaaattcagaagaagaaagagaaggaaagtagagaacgtgaccaagagaga
ttgaagaagatggacggtgcagttgaaatgaaggctgctgcggatgctttggatccaaac
acaaagactatgctggcaaaggatgcaagtatccggtctgaggatgggaaaggacctggc
gagaggaatggtgtgagaggaaggagcagggtttctaggtctccacagtcggctggtcat
tccccttcacctcatcgaggttcaccttccaggtctgtcagcaagtctcattccaattcc
agagattattcaggtggcaggcgcaagtcaaggagtatgtctagatcacctaatgcacga
aggcgctctatttcttctgacagggtgcaccactctttgagaagacggtcaattacacct
cgtaggaggcattcacctcggttctccccctctcctagacgaagaccatcttatttaagg
cgaagatctaggtcacgatcgcttcgcagatcaccatctccctttcggcgtagattgcat
tcaccttttcgacgcaagtcaccctcaccaatgcgtcgtagatcaccatctcctgttcgt
cgccgtagatcgccatctcctattcggcgtcgtaggtcgccatcaccagttcggcgtcgt
aggtcgccgtcaccagtgcgacgccgtaggtcgccatcacctattcgacgtcgtaggtca
ccgtcacttattcgacgtcgtagatcaccttcacctattcggcgtcgtagatcaccttca
cctattcggcgccgtagatcaccttcacctattcggcgccgtagatcaccttcacctatt
cgacgacgtagatctccttcacccatgggaagtgaatccctttcacctgtgcagcgtgga
tccccttctcctgtgcgtcgtaggagcccttcacctgtgcatcgtacgtcactctctcct
gtgcgacggcggtatcaaagatctcctttgactccgcaacatcgatctacatctcccata
catcaaagatcacctgttcctgcccgcatgagaccacagactccttcccgtcataggtct
ccttcaccctatgaatcaagttctccatctcctccacgacgtaggactctatctccaatc
aagaggaaatctcccaatgactataggagatcacctgtgcaatctcctggagagaaaatt
agagtctgtgagagtttttctcctgctgcacgtcgacgttccagctctctgaggtcacca
cctggagaatcaaagaatcggaatgatttacgtaagatgtcagctttttcaccatcacca
gagaggtctcctactgtatcagagtcccctccacgtgcaacaaggaaaaggagtgctagt
gaagataggaggtcattaagtccatatgaaagtcctggcaggcagacctggcatgcaagg
attcattatggcagcttgagtcctccacaaaaaccaagagaaaaacctcgtcaaggtggt
ccagatacaagtaaagaagaaaaagataccaatcgtactagggatcataaatccgtgtca
tcacgtagatctatgcaaaaggaagattattctccagacagagtagcatcagatcgtcat
ccccctgaatctaggacccaacctgataagatagatctgaggaagaaaaaccaggattta
aagagtgaaaaatcctctgggaggggtgatcgtcctcaaacttttgatcaagaaaggtca
ccaaccttgcctggtgagaggcaacagtcatcgtacccaggagaaagtaaaaaatctgat
gagagaaaccactctcgttcaagtaatggcaaggaaagtgatcaacggcgtaagtcagca
aatgcgacaatggtcgttgaaaaagtggatcatggcaaccggagtgatagtgttgattct
ggttctgaggaaagttacaaacacagagctgacaataaggaaaagagaaagcataaatat
gagagggaagaagtggcttcagatgatgactacagttatgattctgaaactgagaggaag
catgctaagaggaggagaaaggaagaaaagaaattaagaaaagaggaaaagcgtcgacgg
cgtgatgagagacgtcgtagaaaggaagagcgacgtgcagagaagcacaaattgaaaaat
cgaaatgatgctgatggttcggatggagaacatatttctagaagggagtctcatccaagt
gacgatgaagtgacagaatctgaacagaaaaggcttgagattgagttacgaaataaggct
ttggaatccattaaagcaaagaagatcaacagtcgctaa
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