Pistacia vera (pistachio): 116112253
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Entry
116112253 CDS
T07386
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116112253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116112253
03041 Spliceosome [BR:
pvy03041
]
116112253
03036 Chromosome and associated proteins [BR:
pvy03036
]
116112253
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116112253
Spliceosome [BR:
pvy03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116112253
Complex B
116112253
Complex C
U2 SnRNP specific factors
116112253
Chromosome and associated proteins [BR:
pvy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
116112253
TFTC complex
116112253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
116112253
NCBI-ProteinID:
XP_031254269
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYLYSLTLQQSTGILCAINGNFSGTKTPEIVVARGKILELLRPESSGKIESVLSTDIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSRNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKQLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRLDLPAERGVLIVSAATHRQKSLFFFLLQ
TEYGDIFKVTLEHDNEHVSELKIKYFDTIPVSASMCVLKSGYLFAASEFGNHALYQFQAI
GADPDVEASSATLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMKISNLFEEEAPQ
IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNLNDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTVRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIH
RGCFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIEKLGETFNETAIPLRYTP
RKFVLQPKRRLLVIIESDQGAFTAEEREAAKKECFEAAGMGENGNGNVDQMENGDDENKD
DPLSDEQYGYPKAESDKWVSCIRVLDPRTGNTTCLLELQDSEAAFSVCTVNFHDKEYGTL
LAVGTAKGLQFWPKRSIGAGYIHIYRFLEDGKTLELLHKTQVEGVPLALCQFQGRLLAGI
GNVLRLYDLGKKRLLRKCENKLFPNSIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDCVPRWVTASHHIDFDTVAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRLN
GAPNKVEEIVQFHVGDVVTSMQKASLVPGGGECIIYGTVMGSLGALLAFTSRDDVDFFSH
LEMHMRQEHPPLCGRDHMAFRSAYFPVKVITSVL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctgcaacaatccaccggcatactctgcgcaatcaatggc
aacttctcgggaaccaaaacccccgaaatcgtcgtcgcgcgtggcaaaatcctcgagctt
ctccgccccgaaagttcaggaaaaatcgaaagtgttctctccactgacattttcggtgcc
attcgctccctcgctcagttccgtctcaccggctctcagaaggactacatcgttgtcggg
tcagattcgggtcggatcgttattcttgagtacaatccttcacgaaatgtcttcgataaa
gtccaccaagaaactttcggtaaatcaggttgtcgccggatcgttccgggtcagtatttg
gctgttgacccaaaaggtcgtgccgttatgattggtgcttgtgagaagcagaaattagtt
tatgttttgaatagagatactgctgctagattaactatttcatctccattagaagctcat
aaatctcacactattgtttattctatatgtggtgttgattgtggattcgataatccaatt
ttcgcagcaattgagttggattactctgaggctgaccaggattcaactggtcaagctgcg
agcgaggcgcaaaagcaattgacattttatgaattagatttagggcttaatcatgtgtca
cgaaaatggtctgaaccggttgataatggggcgaatatgttagttacagtgcctggagga
ggggatgggccaagtggggttttagtttgtgctgagaattttgtgatttataagaatcag
ggtcatccagatgttagggctgttattcctagacgtcttgatttgccagccgaacgtgga
gttttgatagtttcagctgccacacataggcagaaatcgttgtttttctttttgttgcag
acagagtatggggacatatttaaggttactttagaacatgacaatgagcatgttagtgag
ttgaagataaagtattttgatactattcctgtgtctgcgtcgatgtgtgtgctgaaatcg
gggtatttgtttgctgcttcagagtttggcaaccatgctttgtatcagtttcaggcaatt
ggggctgaccctgatgtggaagcctcctcggctacgttgatggagactgaagaaggattt
caacctgtgtttttccagcctagagggctcaagaatcttgttaggattgagcaagttgag
agtttgatgccaattatggatatgaagatttcaaatttgttcgaggaggaagcacctcag
atttttactttatgtgggcgtggtcctcgttcatcacttaggatactgaggcctggtctg
gctgttagtgagatggctgtgtctcagcttcctggtgtcccgagtgctgtttggactgtg
aaaaagaatctaaatgatgaatttgatgcatatatcgttgtttcttttaacaatgcaact
cttgtgctttcaattggtgaaactgttgaagaagttagtgatagtgggttccttgataca
accccttcacttgctgtttctttgattggtgatgattctctaatgcaagttcatcccagt
ggcattaggcatattagggaagatgggcgtattaatgagtggagaacacctggaaagagg
acgattgttaaggttggctccaatagacttcaagtggttattgcactaagtggaggggag
ctaatttattttgaggtggatatgactggacaactgatggaagtggagaagcatgaaatg
tctggagatgtggcttgtttggacattgctccagttccagaaggaaggcagaggtcccga
tttcttgcagttggttcatatgacaacacagtccgtatcttatcgttggatcctgatgac
tgcatgcagattcttagtgtccaaagtgtatcatcgcctcccgaatctctcctttttctt
gaagttcaggcatcagttggtggggaggatggtgctgatcaccctgctagtcttttcctc
aatgcaggtttgcagaacggggttctttttagaacagtggttgatatggtgactggtcag
ctttcagattcccgttccaggttcttggggctgagaccgccaaagctcttttctgttgtt
gtgggaggccgtgctgcaatgctttgtttgtctagtcgaccctggcttggctatattcac
cgaggatgtttccttttaacacctctttcctatgagactcttgaatatgctgcttcgttt
tcatctgatcagtgtgtggaaggtgtcgtttctgttgcagggaatgcgttgagggttttt
actattgagaaacttggagaaacttttaatgaaactgccattcccttaaggtataccccc
agaaagtttgttcttcaacctaagaggagattgctagtaattattgagagtgatcaagga
gcattcactgcagaagagcgtgaagctgcaaagaaggaatgctttgaggccgctggaatg
ggggaaaatggaaatggtaatgtggaccagatggaaaatggtgatgatgagaataaagat
gatcccctctctgatgagcagtatggttatcctaaggcagagtcggacaaatgggtttct
tgcatcagagttcttgaccctcgtacaggtaatacaacttgtctgctggagcttcaggac
agtgaagctgcattcagtgtatgcactgtcaattttcatgataaggagtatggaaccctt
ttagcagttggtacagcaaaaggactgcagttttggcccaaaagaagtataggtgcagga
tacattcatatttatcggttcttggaagatgggaaaacccttgaacttttgcacaagaca
caagtggaaggtgttcctcttgcattatgccagtttcagggaagattactagctggaata
ggaaatgttctcagattgtatgacttggggaagaagaggttgcttagaaaatgtgaaaat
aagctgttccctaactctatcgtttctattcatacctatcgtgatcgaatctatgtaggt
gatattcaagagtcattccatttctgcaagtatagacgggatgaaaatcaactctatatt
tttgccgacgattgtgttccaagatgggttacagcatcacaccatatagattttgacact
gtggctggtgcagacaagtttgggaatgtctattttgtgcgactgccacaggatgtttca
gatgagatagaagaagatccgactggtggaaagattaaatgggaacaggggagactcaat
ggagctcccaacaaagtagaggagatagtacagtttcatgttggtgatgtggtcacatcc
atgcagaaggcatctctggttccaggtggtggagagtgcatcatttatgggactgttatg
gggagcttaggagcattgcttgcattcacttcccgggatgatgttgacttcttttctcac
ctggagatgcatatgaggcaagaacacccaccattgtgtggacgggatcacatggctttt
agatctgcatatttccctgtgaaggtaataacatctgttctctaa
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integrated database retrieval system
