Pistacia vera (pistachio): 116112672
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Entry
116112672 CDS
T07386
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03440
Homologous recombination
pvy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116112672
03460 Fanconi anemia pathway
116112672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116112672
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116112672
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
116112672
FA (Fanconi anemia) pathway
Downstream FA components
116112672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Pex19
Motif
Other DBs
NCBI-GeneID:
116112672
NCBI-ProteinID:
XP_031254651
LinkDB
All DBs
Position
Unknown
AA seq
1324 aa
AA seq
DB search
MDSTTIPYPNPNYEKPKNGYPIGGIQVEFPYQPYGSQLAFMCRVISTLDRAQRDGHCHAL
LESPTGTGKSLSLLCSAIAWQQNYKLKNQYANLSHSKPNPEAMTDPLACGGGFIPESQPS
GVPPSTNAETAKSATNNKNQKKKNAPTIFYASRTHSQISQVIGEYRKTAYRVPMAVLASR
KHYCTNKHVRGKENVDEECKLLLGNRDVGCPEFKNMHKVKAHPSLQKGGCHEVHDIEDLV
KVGQIVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAIVILDEAHNIEDI
SRDAGSIDIEEDILLKLQMELGQLCSVNAMIYQPLSEMTQDLISWIERRKTTLAKREFQH
YCSIWTGDKALRELQEANISQQCFPILLDCATKAIKAATDTESEVPHLSGMSVITLEGLF
SSLTYFFSRNGCHVFDYQLALRRYVKKDAKTSAGDWTCTFSLWCLNPAVVFRDVAELSLS
VILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVESQVWAGVISTGPGNYPLNASYKTAD
GYAFQDALGKTLEEICNVVPGGCLVFFPSYKLMEKLCKRWRETGQWSRLNAKKPLLTEPK
GGSQEDFDLILKDYYHSISQGKKPAVVRKRRVKKVGINHLNATEPLKDTKKDGAGFLAVC
RGKVSEGIDFSDDNARVVIVVGIPFPNITDILVDLKKKYNDTYKSAKNLLSGNDWYCYQA
FRALNQAIGRCIRHRFDYGAIILLDERFREERKRAYISKWLRKSIRQYDNFEKPLEGLKS
FFRDVKDRVGKNMLNLSQNIDNNKNNVPSLVASKELTRKTTQKFNESDHSGQKVHSVTKC
DSTFSQCNSQGCFEVQTSVKLNQDTSSCIQHTDLETEECIHDKNDHSIKFSKGFMSKKNE
KLNNGLEKYFLMKHDDPSPGLKSEGDIVVQASLQVDKDINDCRDYIDLGCSLQKDSRCYE
ASTMPFSNEDPGLSLVKETPGMGDNITVASPGSFSKDGNSSSTIFQASTQSPDQLSFHSR
TLTNLGTVPSKTQSEMVVTPEKDFSGNTSNILPERDSSLSVNSHTQKRRKFLGSPSVDLN
LIANRRIEFSFETTHAEHKSKKSNISAPVTINNGAASHVSSSPIMNKRLQISCSLCRSPL
GLHENHQYVWCSLTASTKVHLVSLLKEQLEPGDANVPSVPVIITDISSVHQQLCKRTLEG
ASGKGIWCEEDGCVYNNIFCPFCSIPNNCLGVQIVACDASNIQLLNKILLYLERLEIRNP
EAEKYNPSEAKDSMPVKGMGVDKVAASNCIEKFSYSPSQNSGGWRTTKTKLRLPKKALLS
NVEG
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggattctacaacaatcccgtaccctaaccctaattatgaaaaacctaaaaatggctat
ccaatcggaggtattcaagtggagtttccgtatcaaccgtacgggagccagttggcattc
atgtgcagagtgatatcgaccctggatcgagcgcaaagagacggtcactgtcacgcattg
ctagagtcaccgaccggtaccggaaaatcgctctcgcttctttgctcggctattgcatgg
cagcagaattataagttaaagaatcaatatgcgaatctctctcattcgaagcccaatcca
gaggccatgacggatcctctagcctgtggtggaggattcatccccgagtcgcagccttct
ggtgttccaccgtcaacaaatgcagagacggctaaatctgcaacaaataacaagaatcaa
aagaaaaagaacgcacctaccatattttatgcctcgaggacgcattcacaaatttctcaa
gtaattggtgaataccggaaaactgcttatcgggtgccaatggcagtgttggcttcacgg
aaacattactgcacaaacaaacatgtgcgtggcaaagagaatgttgatgaagaatgcaag
ctgcttttgggaaatcgagatgtaggatgccctgaattcaaaaatatgcataaagtcaaa
gctcatccatcattacagaaaggaggttgccatgaagttcatgatattgaagatcttgtg
aaagttggacaaattgttagagggtgctcatattatgcagcacgttccatggctgatgat
gcacagttggtgttttgcccgtacagctacatcattaatcctgttattcgcggagcaatg
gaagttgatattaaaggagccattgtcattcttgatgaagcccacaatatagaagacatt
tctcgtgatgctggtagcattgatattgaagaagatattttacttaaattgcagatggaa
ttaggacaactatgctccgttaatgccatgatttaccaacctttaagtgaaatgacacag
gacctcataagttggattgagcggaggaaaacaacattagcaaagcgggaatttcagcat
tactgctctatctggactggtgataaagctttaagagaactgcaagaagctaacatctca
cagcaatgcttcccgatattactagactgtgccacaaaggcaatcaaagcagccacagat
acagaatcagaggtgccgcatttaagtggcatgtcagtgataacattggaaggattattc
tcctcgcttacatatttcttctcaagaaatggttgtcatgtatttgattatcagcttgcg
ttacgacgatatgtcaaaaaagatgcaaaaacttctgctggtgactggacatgtactttt
agtttatggtgcttgaatccggctgttgtgttcagagatgttgctgaactttctttgtct
gtcattttaacatctgggactttatcaccgatgaattccttctcatctgagcttggagtt
cagtttggaacttgtctggaggctccacatgtaattgatgttgaatcacaggtgtgggct
ggtgtaatctccactggtccaggtaattatcctttgaatgcaagttataaaacagctgat
ggatatgccttccaggatgcccttggcaaaactttagaggaaatttgcaacgttgttcct
ggtggctgtcttgtgttcttcccaagttataagctgatggagaaactgtgtaaacgttgg
cgtgaaacaggccaatggtctcgacttaatgcaaagaaaccgcttcttacggagccaaaa
ggaggaagccaggaagattttgatctcattttgaaggattattatcactcaatttctcaa
ggcaagaaacctgctgttgtgagaaagagaagggttaagaaagtaggcatcaatcattta
aatgcaaccgagccccttaaagacactaaaaaggatggagctggttttcttgcagtttgc
cgaggaaaggtttcagaaggaattgactttagtgatgataatgcccgtgtggttatagtt
gttggcattccatttccaaacataactgatattctagttgatttgaagaagaaatataat
gatacatataaatcagcaaaaaaccttctaagtggtaatgactggtactgctaccaggcc
tttcgagctctaaatcaagctataggacgctgtatacgacataggtttgattatggagcc
atcatcttgttagatgagcgttttcgggaggaaaggaaacgagcatatatttcaaagtgg
ctaaggaaatccattagacagtatgacaactttgaaaaaccactagagggattaaaatct
ttcttcagagatgtcaaggatcgggttggcaagaatatgttaaatttgtcacagaatatt
gataataacaagaacaatgtcccctctttggttgcaagtaaagagttgacaagaaagaca
actcagaaatttaatgagtctgatcattcaggacagaaagtccattcagtgacaaagtgc
gattccaccttttcccagtgtaattctcaaggctgttttgaagttcagacatcagtgaaa
cttaatcaagacactagtagctgcatacaacatactgacctggaaactgaagaatgtatt
catgataaaaatgaccactctattaaattcagcaaagggttcatgagtaaaaaaaatgaa
aaactgaacaatggactggaaaaatactttctgatgaagcatgatgacccttctcccggg
ttgaaatctgaaggcgatattgtagttcaggcatctttgcaggtagataaggacatcaac
gactgcagagattatattgatctaggatgcagtttgcagaaagattcaaggtgctacgag
gcttcaactatgccattctccaatgaagatccaggattatcccttgtcaaggaaacccct
ggtatgggtgacaatattactgtggctagtcctggatccttctctaaggatggaaactct
agttcaaccatatttcaagcctctacccagtctccagatcagttatcattccattcaagg
actttaacaaatcttggcacagttccttccaaaacccagtccgagatggtagttactcca
gaaaaagattttagtggaaacaccagcaatatcctgccggaaagagattcttctttgagt
gttaactcacatacccaaaagaggaggaagttcttgggttctccatcagttgacctgaac
ttaattgcaaatcgcagaattgaatttagctttgagaccactcatgcagaacataaatcc
aagaagtcaaatattagtgcaccagttacaataaataatggtgctgcttcacacgtgtca
tctagtcctattatgaacaagagattacaaatttcttgttcactttgcagaagcccttta
gggcttcatgagaatcatcagtatgtttggtgctcattaactgcatctactaaagttcac
ttagtatctcttctgaaagaacaactggaacctggtgatgcaaatgttccaagtgtacct
gttatcattactgacatttcatcagttcatcagcagctctgcaagagaactcttgaaggt
gcttctggaaagggtatatggtgtgaagaagatgggtgtgtatacaataacatcttttgt
cccttctgcagtatccccaacaactgtcttggtgtacagattgtagcatgtgatgcctca
aatattcagttacttaacaagatattgctttacttggaacgtttggaaattaggaatcct
gaagcagaaaaatacaatccgtcagaagccaaggattcaatgccagttaagggtatgggt
gtagataaagttgctgcttcaaattgcattgaaaaattttcatattccccatcacagaac
tcgggaggctggaggaccacaaaaacaaagctgagactaccaaagaaagccctgctttct
aatgtagagggctga
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integrated database retrieval system
