Pistacia vera (pistachio): 116113214
Help
Entry
116113214 CDS
T07386
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116113214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116113214
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116113214
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116113214
mRNA degradation factors
3'-5' decay
Ski complex
116113214
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_16
Motif
Other DBs
NCBI-GeneID:
116113214
NCBI-ProteinID:
XP_031255223
LinkDB
All DBs
Position
Unknown
AA seq
1346 aa
AA seq
DB search
MDRIQASNELAFRVGFSGHSGHLRVEPLYTVEDRSDPIKSLPDFILPPAFPRETPESIKE
HIEEKYLSVGLDADEFSPAKVGRQWDFDWFGMAKIPLEPSLPRSVVIPVWEVPYRRQMKQ
GKWEPNSVQVDVSELMLGSQDSGPLPRMAGPAKDFVRGSINNRPFRPGGLEDSQSLERIL
PDGASNGEWVQEMLNGGPVQVVPPSFKQGVDFGELKAYPSSWNIYTDQDQRSFASSSEEK
LNELSVQFDDLFKKAWEEEVPEIEKDGHLSEAESVELDAEVNEASGLSSVQEPDLSVLDE
ILLVDSKGSTSILDGGGQQQQKEAWAVSGGSEGIADHFYELVPDMALDFPFELDNFQKEA
IYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFSGKFD
VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEE
VIIMLPRHINIVLLSATVPNTVEFVDWIGRTKLKKIRVTGTTKRPVPLEHCLFYSGVFYQ
ICENETFIPEGLKTAKDAFKKKNSSSVGGGSGSYAGFSAGRDGVRSQKQENHNRGKQNKH
SGPKNSGNFSGSGWVNHNNGGSQNNWGSRRSEASIWLSLINKLSKKSLLPVVIFCFSKNR
CDKSADALTGTDLTTSSEKSEIRIFCDRAFSRLKGSDRSLPQIVRVQSLLRRGIGVHHAG
LLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGREFRQLLPGEYT
QMGGRAGRRGLDKIGTVVVMCRDEIPEEKDLKHVIVGSATRLESQFRLTYIMILHLLRVE
ELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPIKAIECIKGEPSIEEYYEMYSEAEK
YNNQITEAIRQSHCAQQFLTHGRVVVVKSESAQDHLLGAIVKATTSGSNKQYIVLVLKPD
VPSTTQTPLEKKGGNFPQGYFMVPKSKRGLEDDGYFAAPTSRKGSGAINIELPHHGAAAG
VSYEVRAIDSKELLCICKQKIKIDQVRLLEDGSSAAFSTTVQQLLDLKSGGNKYPQAVDP
VKDLKLKDMELVEAWYKWNSLREKMETNKCHDCIKLEEHLKLAKEIKRHKEEVNALKFQM
SDEALQQMPDFQGRIDVLKEIGCIDEDLVVQIKGRVACEMNSGEELICTECLFENQLDDL
EPEEAVAIMSAFVFQQKNTSEPSLTPELSEAKQRLYNTAIRLGELQAHFKLQIDPVEYAR
ENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFRNAAAIMGNSAL
YKKMETASNAIKRDIVFAASLYITGV
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggatcggatccaggcctcgaacgagctcgctttccgggtcggattctccggtcacagt
ggccatctcagggttgagcctctctacaccgtggaagaccgctccgaccccataaagtct
cttcccgattttatccttccccctgcgtttcctagggaaactcctgaatcaataaaggag
catatagaggagaaatatctgtctgtgggattggatgctgatgaattttctccagcaaag
gttggaaggcagtgggattttgattggtttggtatggccaagatacccctagagccatct
ttgccgaggtctgttgttatcccagtatgggaggtgccataccgacgacaaatgaaacaa
gggaaatgggaaccaaattcagtacaggtggatgtgtcagaactgatgttaggatctcaa
gattctggtccgttgccacgcatggctggaccggcaaaagattttgtgagaggaagcatc
aataaccgtccttttcgtccaggaggtttggaggattcccaatctttagagaggattctt
cctgatggtgcttctaatggtgagtgggtgcaagaaatgctgaatggtggtcctgttcag
gttgttcctccaagctttaagcaaggagtagacttcggtgaactcaaggcatatccttct
tcatggaacatttacacagaccaggatcaaaggtccttcgcgagctcatcagaagaaaaa
ttgaatgagttgtctgtacagtttgatgatttattcaagaaagcttgggaagaggaagtt
ccagaaatagaaaaagatggtcatctgtcagaagctgagtctgttgagttggatgctgaa
gtaaatgaggccagtggactcagcagtgtgcaggagcctgatctatctgtattggatgag
atattattggttgactcaaaaggctcaacatcaatattggatggtggtggtcaacagcag
cagaaggaggcctgggctgttagtggaggcagtgaaggaattgctgatcacttttatgaa
cttgttcctgacatggcacttgattttccttttgaattggataactttcaaaaggaggct
atctactatttggaaaagggcgagtctgtttttgttgcagctcatacttcagctggaaag
acagttgttgcagagtatgcatttgctttggcatcaaagcattgtacaagggctgtgtat
acagctcctatcaaaaccatcagcaaccaaaagtatagggatttttctgggaagtttgat
gttggccttctcactggtgatgttagcttgaggccagaggcttcttgtctcatcatgacc
accgaaatattaaggtcaatgctttaccgcggtgctgatattatacgtgatattgaatgg
gttatattcgatgaagtgcactatgtcaatgatgttgaaagaggtgttgtttgggaagaa
gttataattatgcttccaaggcatatcaatattgttcttctttcagccacggtaccaaac
acagttgaattcgttgactggattggtcgaacaaagctaaagaaaattcgtgttactggg
actaccaaaaggccagttcctctggaacactgcctattttactctggagttttctaccaa
atatgtgagaatgaaactttcatacccgaagggttgaaaactgctaaagatgcattcaag
aaaaagaattcaagttcagttggtggtggtagtggatcctatgctgggttttcagcaggt
cgtgatggggttcgatctcagaaacaagaaaatcataatcgtggtaaacagaataagcat
tctggtcccaaaaattcagggaatttctctgggagtggttgggtgaatcataacaatggt
ggtagccagaacaattggggttcaaggagatcagaagcttctatctggttatcgcttata
aacaagctgtcaaagaagtcactattacctgtggttatattttgtttctctaagaatcgc
tgtgataaatcagctgatgccttgactggcactgacctcactactagttctgagaaaagt
gagataaggattttttgtgacagagcattttcgcgactaaagggttctgatcggagttta
ccacagattgtcagggtacaaagcctccttcgtcggggaattggtgtccatcatgcaggg
ttgctaccaattgttaaagaagttgttgaaatgcttttttgtcgaggtgtgattaaggtt
ttgttttcaacagaaacttttgctatgggggttaatgcccccgccagaacggttgttttt
gatactttgaggaagtttgatggcagggaatttagacaattacttcctggtgagtacact
caaatgggaggtcgtgcaggcagaagaggtctcgataaaattggtacagtagttgtaatg
tgccgtgatgaaatcccagaagagaaggatttaaaacatgttatagttggaagtgcgacc
aggttggaatctcagtttcgactaacttatataatgattctccatcttcttcgtgttgaa
gaattgaaggtggaggacatgttgaaaagaagtttcgccgaattccatgctcagaagaaa
cttcctgaacagcaacaacttctgatgcgaaagcttgctcaaccaataaaagctatcgaa
tgtattaaaggtgaaccgtcaattgaggagtactatgagatgtactcagaagctgagaag
tataacaaccagataactgaggcaattaggcagtcacattgtgcccagcaatttctaaca
catggaagggtggtagttgtgaaatcagaatctgctcaagaccacttgttgggagctatt
gtgaaagcaacaacttcaggcagtaataagcagtacatagttttggtgctgaaacctgat
gtaccatcaacaacacagactcccttggagaaaaaaggcgggaatttcccacaaggttat
tttatggtaccaaaatcaaaacgtggtctcgaagatgatgggtattttgctgctcctact
tctcgtaaaggctcaggggccatcaacatagaactaccacaccatggtgctgctgctgga
gtgagttatgaggtcagagcaattgatagtaaagagctactatgtatatgcaagcagaag
ataaagattgaccaagttcggcttcttgaagatggcagcagtgctgccttctcaacaaca
gttcagcagctactggatctgaaatctggtggaaataaatatcctcaagccgttgatcca
gtaaaagatttgaagctgaaagacatggaactagtggaagcatggtacaaatggaatagc
ctaagggaaaagatggaaacaaataagtgtcacgattgtataaaattggaggagcacctt
aaattggccaaagagattaagagacataaagaggaagttaacgctttaaagtttcaaatg
tcagatgaagctcttcaacagatgccagattttcagggacgtatagatgttctgaaggaa
attggttgtattgatgaggatcttgtagttcaaattaaaggtcgtgttgcttgtgagatg
aactcaggggaggagttgatatgcacagagtgtttgtttgagaatcaactggatgacctg
gaaccagaagaagccgtagctataatgtctgctttcgtgtttcagcagaagaatacttct
gaaccgtctctcactcctgaactttctgaggcgaagcaaagattgtacaatacggccata
agacttggggagctccaagcccatttcaaactacagattgatcctgtggagtatgcccga
gaaaatctcaaatttggtcttgttgaagtggtttacgaatgggcaaagggtacaccattt
gcagatatctgtgagcttacagatgttcctgaaggtatgatagttcggaccatcgtcagg
ttggatgaaacctgccgcgaattcagaaatgctgcagcaattatgggtaattctgcgctt
tacaagaagatggaaactgcttctaatgcaataaagcgcgacattgtgttcgcagccagt
ttgtacattactggagtttaa
DBGET
integrated database retrieval system
