Pistacia vera (pistachio): 116113216
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Entry
116113216 CDS
T07386
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116113216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116113216
Spliceosome [BR:
pvy03041
]
Complex B
Other components
Prp19-related factors
116113216
Complex C
116113216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
zf-CCCH_4
zf-CCCH_PARP12
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
116113216
NCBI-ProteinID:
XP_031255227
LinkDB
All DBs
Position
Unknown
AA seq
491 aa
AA seq
DB search
MAHRFLRDHQADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIKTLYVGGVDARVT
EQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK
PQTQRPESEGSDEARQQAVAHSGMLPRSLISQQQNQYQQPGTQDQAAPTPYFNIPPPPQQ
ERAYYPSMDPQRMGAVVPSGEGESKSGPEKQQQGQHYNYPPMPPPHGQYQQHLYPPYGYM
RPVAPYQHYPPPYQSSMPQPNAPPMTQQFQHSAPPRSAPPVSAPPPSGSVPSTSAPSVSA
PPVPAPQGPSQ
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccgatttttgagagatcaccaggccgatggttgggaacgttctgattttcct
ataatctgtgagtcatgtcttggtgataacccgtatgtgcgaatgacaaaagcagattat
gataaggagtgtaagatctgcacgcgaccgtttacagtttttaggtggaggcctggtcgt
gatgcaagatttaagaagactgagatttgccagacatgcagtaagttgaaaaatgtttgt
caagtatgtcttctggatctggaatatggattgcctgttcaggttcgtgatactgctctc
agcatcaattcaaatgatgccattcctaagagtgatgtgaacagagaatactttgctgag
gagcatgatcgtagggctagagctggtattgattatgagtcctcgtatgggaaggcacgt
ccaaatgataccatcctgaagcttcaaagaacacagccttactacaagcgcaacagagca
cacgtatgcagtttttatgttcgtggtgaatgcacaagaggtgctgagtgcccttatagg
catgaaatgcctataactggagagttgtcacagcaaaatattaaagatcgttattatgga
gtgaacgacccagttgcaatgaagctactcaataaggctggtgaaatgccttctctggaa
ccccctgaggatgaaagcattaaaaccctttatgtgggtggagttgatgcaagggtcact
gaacaggatctaagggataacttttatgcccatggtgaaattgaatccataaagatgcat
ccacaaaaagcatttgcttttgtaacctacacaacaagagaaggtgcagagaaggctgca
gaagagctgtctaacaaactagttataaagggtctgaggctgaagctgatgtggggtaaa
ccccaaacacaaagacctgaatcagaaggttcagatgaagccaggcagcaggcagttgct
catagcgggatgttgccccgttcacttatatctcagcagcaaaatcaatatcaacagcct
ggcactcaagaccaagctgccccaacgccgtacttcaatattcctcctccacctcagcag
gaaagagcctattatccatccatggatcctcaaagaatgggtgcagttgttccatccggg
gaaggtgagagcaagtctggtccagagaagcagcaacaaggacagcattataattatcca
cccatgccacctcctcatgggcaatatcagcaacatctttatcctccttatggatacatg
cgtccagtggcaccatatcaacattaccctccaccatatcagtcttcaatgccgcagcca
aacgcgccaccaatgacacagcagtttcagcattctgctccaccaaggtcggctccccca
gtgtctgcacccccaccatcagggtctgtaccctcgacatcagccccttcagtgtctgct
ccaccagttcctgcaccacaaggaccgtctcagtag
DBGET
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