Pistacia vera (pistachio): 116113690
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Entry
116113690 CDS
T07386
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116113690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116113690
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
116113690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Nudt16-like
Motif
Other DBs
NCBI-GeneID:
116113690
NCBI-ProteinID:
XP_031255709
LinkDB
All DBs
Position
Unknown
AA seq
215 aa
AA seq
DB search
MSVVANGDSHETENTSDQSYVLDIYPLSSYYFGSKEPIPFKDQTLDDRIQRMKSNYAAHG
LRTCVEAVILVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIDGLKRKLKRKLSLNEDG
NEIDWEVGECLGMWWKPDFETLLFPYLPPNVKRPKECTKLFLVKLPVSQKFIVPNNMKLL
AVPLCQIHDNQKTYGPVISGVPQLLSKFSFNIIDS
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtcgtagccaacggtgatagccatgaaaccgaaaacaccagtgatcagagttat
gttttagacatataccctcttagtagctactactttggatccaaagaacccattcctttt
aaagaccagactttagatgatcgtattcaaaggatgaaatccaactatgctgcacatggc
ttgaggacttgcgtggaagcagttattctggttgagttgttcaaacacccccatctgttg
ctgctgcaagtaagaaattccatcttcaagcttcctggcggtcgcttaagaccaggtgaa
tcagacattgatggattgaaacgtaaactgaagaggaagctttctctcaatgaagatggt
aatgaaatagattgggaggtgggggaatgccttggtatgtggtggaagccggattttgaa
acattgctgtttccatacttgcctcctaatgtaaaacggccaaaggagtgcacaaagctc
tttcttgtgaagctaccagtgagccaaaagttcattgtaccaaacaacatgaaattgctt
gcagtgccattgtgccagattcatgacaatcagaagacatatggaccagtaatatcagga
gttccgcagctgctatcgaaattctcattcaacattatcgactcttaa
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integrated database retrieval system
