KEGG   Pistacia vera (pistachio): 116113693
Entry
116113693         CDS       T07386                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
pvy  Pistacia vera (pistachio)
Pathway
pvy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116113693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvy03019]
    116113693
Messenger RNA biogenesis [BR:pvy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     116113693
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st WD40_RFWD3 eIF2A Cytochrom_D1 Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_WDR41 Beta-prop_WDR11_1st Nbas_N Beta-prop_VPS8 Tricorn_2nd CFAP43_N Beta-prop_HPS5 PD40 Beta-prop_ACSF4 Beta-prop_LRRK2 Beta-prop_pof12
Other DBs
NCBI-GeneID: 116113693
NCBI-ProteinID: XP_031255712
LinkDB
Position
Unknown
AA seq 321 aa
MKLAGLKSVENAHDESVWAATWVPATETRPALLLTGSLDESVKLWRPDELELERTNTGHC
LGVVSVAAHPSGVIAASASLDSFVRVFDVDTNATIATLEAPPSEVWQMQFDPKGTTLAVA
GGGSASIKLWDTATWKLVATLSIPRPEGPKPSDKSSSKKFVLSVAWSPDGRRLACGSMDG
TISVFDVARFKFLHHLEGHFMPVRSLVYSPSDPRVLFSASDDAHVHMYDAEGKSLVGAMS
GHASWVLSVDASPDGAAIATGSSDRTVRLWDLGMRAAVQTMSNHTDQVWGVSFRPPGGTS
VRAGRLASVSDDKSISLYGYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaacttgcaggcctaaaatctgtagagaacgcacacgacgagtctgtgtgggcggcc
acatgggtgcctgccaccgaaactcgaccggctctcttgctcaccgggtccttagacgag
tccgtcaaattgtggcggcccgacgagctggagctggagcggaccaacaccggccactgt
ttaggcgtggtttcagtggctgcacacccttccggtgttatagctgcctcagcttctctc
gacagcttcgttcgtgtcttcgatgttgataccaacgccactattgctactctcgaagct
cctccctctgaagtttggcaaatgcagttcgatcccaagggcaccacacttgcagttgct
ggagggggtagtgcatcaatcaagctttgggacactgccacatggaaattggttgccacc
ctttcaattcctcgaccagaaggacccaagccctcagataaaagcagcagcaagaagttt
gttctatcggttgcatggagtcctgatggcagaagacttgcttgtggttcaatggatggc
actatttctgtttttgatgtagcccgctttaaattcctgcaccatctggaaggccatttc
atgccagttcgttctcttgtatattctcccagtgatccacgtgttctcttctctgcatca
gatgacgctcatgtgcacatgtatgatgctgaggggaaaagtctggtcggggctatgtct
ggtcatgctagttgggtattgagtgtggatgcaagcccagatggagcagccattgcgaca
ggatcaagtgatagaactgtaaggctttgggatcttggcatgagagccgctgtgcagaca
atgagcaaccatacagaccaggtttggggagtgtcgtttagaccaccgggaggtactagt
gttcgggcaggacggcttgctagtgtgtcagatgacaaaagcatatcactctatggttac
tcctga

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