Pistacia vera (pistachio): 116114458
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Entry
116114458 CDS
T07386
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116114458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116114458
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116114458
mRNA degradation factors
5'-3' decay
Decapping complex
116114458
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
116114458
NCBI-ProteinID:
XP_031256466
LinkDB
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Position
Unknown
AA seq
800 aa
AA seq
DB search
MERSDGKDFHLFAHSSSSTGNALFDASQYEFFGQNVGEELELGGLEDDRNDAPVFGSVDD
EYHLFDKVEGFGAIPDVDDMTTTFAKLNRVVTGPRNPGVIGDRSGSFSRETLSDSKFASG
SSATDWAQDGEFGSWFDQQMFDAENSEDGKRWSSQPQPSSARFPESESKPLYRTSSYPQE
QPLHHFSSEPILVPKSSFTSFPPPGSRSQQASPRHLNIPSAGGPQSPFSAPNLSPVSNSN
LRRAGLSHGLHYGGNLSQLTSPGISLTNRPQNHWVSHAGLLHGDHSSFLHNILQQQLPYQ
NGLMSPQLVSAQQQLQQQRLHHQVQPSLAHFAALQSQLYSSHPSSHKLMHGLSDIREQKP
KPSQRGRHGMRYSQGSENSSQKSDSGWVQFRSKYMTAEEIESILKMQHVATHSSDPYIDD
YYHQARLAKKSSGSRVKNHFFPSHLKELPSRNRNSVEHHLHVDAYGRIPLSSIRRPRPLL
DVDPPSGLGDGTTEQKASEKPLEQEPMLAARVTIEDGLCLLLDIDDIDRLLQFSQHQDGG
AQLKQKRQMLLEGLAASLQLVDPLGKSGQTVGLAMKDDIVFLRLVSLAKGRKLFIKFLQL
LIPGSELTRIVCMAIFRHLRFLFGGLPSDPAAAQTTTNLAKTVCVCVNGMDLRALSACLI
AVVCSSEQPPLRPLGSSAGDCATLILISVLERASELLAHAAGSMRNLDLWHASFDNFFDL
LTKYCMSKYETIKQSQSSTENNSEAIKREMPRELLRASLPHTNEEQLNSLRNFANQCESN
AGSIAYAGRGGQIISESVRG
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggagagatcggatggcaaagatttccacctcttcgctcactcctcctcctccaccggt
aatgcactctttgatgcatcacaatatgaattctttggtcaaaatgttggggaagaattg
gaattggggggactggaagatgatcgaaatgacgctcctgtgtttggatccgttgacgat
gagtaccatttgtttgataaagtagaaggttttggagctatacccgatgtggatgatatg
actactacttttgcaaagttgaacagagttgtcacaggaccacgaaatccaggtgtaatt
ggtgacagatcaggatcgttttcgagggaaaccctatctgacagcaagttcgcttcaggt
tcatctgctaccgactgggcacaagatggagaatttgggagctggtttgatcagcaaatg
tttgatgctgaaaactctgaagacggaaagagatggtcatcacaaccacaaccttcttct
gctcgttttccagaatcagaatcaaaacccctgtacagaacatcctcttatccccaggag
caaccactgcatcacttctctagtgaaccaattcttgtgcccaaatcaagtttcacgtca
tttcctcctcctggtagcagatcgcagcaggcttcaccacgtcatctgaatattccttct
gctggtggacctcagtcacccttttctgcaccgaacctctctcctgtatccaactctaat
cttcgtcgggctggcttatctcatgggctgcattatggtggcaatttgtctcagttaaca
tctcctggcatttctcttactaaccgaccacaaaatcactgggttagtcatgctggctta
ttacatggggatcactctagcttcttacacaacatattgcagcaacagttaccgtaccaa
aatggcctgatgtctccgcaattagtgtcagcacagcagcagctacaacagcagagattg
catcatcaagttcaaccgtctttggcccactttgcagctttgcaatcacaactatacagt
tcacatccttcttcacacaaattgatgcatggattgtctgatattagggagcaaaaacca
aagccatctcagagaggcagacatggcatgcgctattcccaaggctctgagaatagtagc
cagaagagtgatagtgggtgggtacaattcaggtccaagtatatgacagctgaagagata
gagagtatacttaaaatgcagcatgtggcaacacatagcagtgatccgtacatagatgat
tattaccaccaagctcgccttgcaaaaaaatcttctggatcgagggtgaaaaatcatttt
ttcccttcacacctgaaggagctaccgtctcgaaaccgcaacagtgtggaacatcacctt
catgttgatgcttatgggagaattcccctatcttctatacgtaggcctcgtcctctcctt
gatgttgatcctccatctggtcttggtgatggaactactgaacaaaaagcctctgagaag
cctctggaacaggagccaatgctggcagctagagtcaccattgaagatggtctttgtctt
cttcttgatattgatgatattgaccggctcctacagtttagtcagcatcaggatggtggg
gctcagctcaaacagaagcgccagatgctgctagagggattggcagcttcacttcagctt
gttgatccacttgggaaaagtggccagacagttgggctagccatgaaggatgacattgtg
tttctaaggttggtctctcttgctaaaggtcgaaagcttttcatcaaatttcttcagctt
ctaatccctggcagtgaactcacccgaattgtctgtatggctattttccgtcatttgagg
tttttgtttggtggccttccctctgatccagctgcagctcagacaactactaatcttgca
aagacagtttgtgtatgtgttaatggcatggatcttcgtgcactcagtgcttgtcttatt
gctgttgtttgttcctcagagcagccaccgctccgcccacttggtagctctgccggggat
tgtgccacccttattttaatatcagttcttgaaagagcaagtgaactgctagcccatgct
gctggtagcatgcgtaaccttgacctatggcatgcttcatttgacaatttttttgatctt
cttaccaagtattgcatgagtaagtatgaaactataaagcaatcccagtcaagcactgaa
aacaattcagaggcaataaagcgggaaatgcccagggagcttcttcgtgctagtcttccg
cacactaacgaggaacagctgaattctttaagaaattttgccaaccaatgcgagtccaat
gcagggtccattgcctatgctggtcgtggtggccaaataatctctgagtcagtgcggggt
taa
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