Pistacia vera (pistachio): 116114806
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Entry
116114806 CDS
T07386
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116114806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116114806
03012 Translation factors [BR:
pvy03012
]
116114806
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116114806
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116114806
Translation factors [BR:
pvy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116114806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Ank_2
Ank_5
Ank
ATPase
AAA_22
nSTAND3
AAA_19
AAA_7
ResIII
ABC_tran
Rad17
AAA_23
PhoH
Ank_3
Sigma54_activat
AAA_25
N6-adenineMlase
Motif
Other DBs
NCBI-GeneID:
116114806
NCBI-ProteinID:
XP_031256819
LinkDB
All DBs
Position
Unknown
AA seq
727 aa
AA seq
DB search
MGMISKSSGRGKQRRVSVYKAKKDAEKVKERDNRTSLMFSEESKVVLQDLFTHYPPDDGE
SGEKLVAKHDGKNNKKRGKRDDIFCKPPMNKAEIAKKVELLASMIEKDANLRQVTKQRSN
LPIASFKNIITSTIESNQVVLICGETGCGKTTQVPQYLLDHMWGKGDACKIVCTQPRRIS
ATSVAERISYERGENVGENIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSKGGNRLKEAS
NNPAKDDVSAITHIIVDEIHERDRYSDFMLAIMRDMLPVYPQLRLILMSATLDADRFSQY
FGGCPIIRVPGFTHPVKSFYLEDVLAILKSAESNHLDSAAISVPDEDTELTEDDKSTLDE
AMNLAWSNDEFDMLLDFVSSEGAPKIYNYQHSLTGLTPLMLFAAKGRVGNVCMLLSHGAD
CHLKAKDGTTALELAEREDQQEVAQIIKKHMEVALSDLKKQHLLDKYLATVNPETIDLVL
LEQLVRKICKDSEDGAILVFLPGWEDINRTRERLLADAFFRDNSKFVIISLHSMVPSVEQ
KKVFKRPPLGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSK
ASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNCKIK
DFXGVKLKGTCCTGNEVKGFGTFAKGKNNTLRTLGVEETTSIRGYVERDGFSEFCMGLNL
GPSHPVC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggtatgatatccaaaagttctggacgtgggaagcagcgacgtgtttctgtttataaa
gctaaaaaagatgcggagaaagtgaaggagagggacaatcgaacttcattgatgttttca
gaagagtcaaaagtggttttgcaagatttatttacacactacccacctgatgatggagag
tctggagagaaattagttgcaaaacatgatgggaagaacaataaaaaacgaggaaaaaga
gatgatattttctgcaagcctccgatgaacaaggcagaaattgcaaagaaggtggaattg
cttgcatctatgatagagaaggatgcaaacttgagacaggtcactaaacagaggtcaaat
cttccaattgcatccttcaagaatatcatcacttccacaatagaatctaaccaggttgtc
ctcatttgtggtgaaacagggtgtggaaagacaacacaggtcccgcaatatctgttagac
catatgtggggtaagggtgatgcatgtaaaatagtgtgtactcaacccagacgtatctct
gcaacatcagttgctgagagaatatcttatgaaagaggagaaaatgttggagaaaatatt
ggatacaagatccggctggaaagtaaaggtgggaagcactcttcaattgtgttctgcaca
aatggggttcttttgagattgctggtctccaaaggtggtaataggttgaaggaagcttct
aataaccctgcaaaggatgatgtttctgcaataactcacattattgtggatgaaattcat
gaaagggatcgctactctgatttcatgttggcaattatgagagacatgcttcctgtgtat
cctcaacttcggctgatattaatgagtgctacccttgacgctgatagattttctcaatat
tttggtggctgcccaatcattcgtgtccctgggttcactcatcctgtaaaaagtttctat
ttggaagatgtacttgccatcctgaaatctgcagaaagtaatcaccttgactctgctgcc
ataagtgtcccagatgaggacactgaattaacagaggatgataagagtactttagatgaa
gccatgaatttggcttggtcaaatgatgagtttgatatgctcctagattttgtttcttct
gaaggagccccaaagatctacaattaccagcattccttgactggtctaacaccattaatg
ttatttgctgcaaagggtagagtgggtaatgtttgcatgctcctctctcatggtgcagac
tgccatttaaaggccaaagatggaactacagcattagagttggctgaacgagaagatcag
caagaagtggctcaaataattaaaaaacacatggaagttgccctttcagacttgaaaaaa
caacacttactggataaatatctagcaactgtcaatcccgaaactatagatcttgttctt
ttagagcagttagttagaaaaatctgcaaagattcagaagatggagctatccttgttttt
cttccagggtgggaagatataaatagaactcgggagagattacttgcagatgcttttttc
agagataattccaaatttgttataatatctctgcattctatggttccatcggtggagcaa
aagaaggtctttaaacggccacctcttggttgtcggaagattgttctttcaaccaatatt
gctgaaactgccattaccattgatgatgttgtgtatgtcatagatagtggtcgaatgaaa
gaaaaaagttatgatccttacaataatgtatcaactcttcagtcttcttgggtttcaaaa
gcaagtgcaaagcagagagagggccgtgcaggccgctgtcagcctggaatctgttatcat
ctttattctaaactccgagcggcttctttgcctgattttcaggttcctgaaattaagaga
atgccaattgaggaactttgtttgcaggtgaagttgcttgatccaaattgcaaaatcaaa
gatttctnaggtgtaaagttgaagggaacttgttgtacgggaaatgaagtaaaagggttt
ggtacctttgcaaagggtaaaaacaacactctcaggactcttggcgtggaggaaaccacc
tcaatcaggggttatgtagagagagatggattttcagagttttgtatggggctgaacctt
gggccttcccaccctgtttgttag
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