Pistacia vera (pistachio): 116115167
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Entry
116115167 CDS
T07386
Name
(RefSeq) uncharacterized protein LOC116115167
KO
K06100
symplekin
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116115167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116115167
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116115167
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116115167
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116115167
U7-dependent histone pre-mRNA processing factors
116115167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
mTOR_dom
HEAT_EZ
HEAT_2
CRM1_C
Motif
Other DBs
NCBI-GeneID:
116115167
NCBI-ProteinID:
XP_031257190
LinkDB
All DBs
Position
Unknown
AA seq
1943 aa
AA seq
DB search
MVGMTNSSSRETYASLVFSTKAAMDIPLKLEYLRRLKQDLIEEENVIVISEILPRIFDLQ
SDSFAPVRKFVTEIIGEVGLKHVQFLPEIMPVLISVLDDSAPAVARQAITCGLDLFRSTL
VKLAIQGLHSSELDNSVESSWTWILKFKEKIYLMAFQGSGGVRLLALKFVEAVILLYTPD
PNGSLKPSPDEGNLVEFNISWLRGGHPVLNMGDLSIEAGEKLGLLLDQLRFPTVKSLSSL
VIVVLINSLSAIAKKRPAYYGRILPVLLALDPPSSVIKGMHLSSAHHALKNALLSCLKCT
HPGAAPWRDRLVDALKEMKAGELAERALSQVCKANGSVEDIKNDLPVIKEEKPSIQACDD
VRTNLGRKRSGADDNSDPDEENEVSGKRVRSTLSVSEESSKALNRNIIVSQDQIPSTGSA
SNKGHGDTGPVQQLVAMFGVLVAQGENAIRSLQILISSISADLLAEVVMANMCNLPLNCS
QADGDEESVLEMTIFGSDTGAKYPASFLADVLSLSSSFLPIASLLDEQHSMANDAAKPQR
EEELLAPAVADGAVLFDGFTPEAEVAALPTGVVASSDVLPKKENSDLSISSDNHDVGSLE
SDIPGLNSSACNDGFSETFVTSLLATKDIEDVSQEQETGERSLLDLPSVSTDRSRSEETS
PKAATTDPNSLIASTATSVTLSSPFALPKMSAPVVDLADEQKDQLQNLAFMRILKTYKQV
AVAGGSQIRFSLLAYIGVEGLHSSELDNSVESSWTWILKFKEKIYLMAFQGSGGVRLLAL
KFVEAVILLYTPDPNGSLKPSPDEGNLVEFNISWLRGGHPVLNMGDLSIEAGEKLGLLLD
QLRFPTVKSLSSLVIVVLINSLSAIAKKRPAYYGRILPVLLALDPPSSVIKGMHLSSAHH
ALKNALLSCLKCTHPGAAPWRDRLVDALKEMKAGELAERALSQVCKANGSVEDIKNDLPV
IKEEKPSIQACDDVRTNLGRKRSGADDNSDPDEENEVSGKRVRSTLSVSEESSKALNRNI
IVSQDQIPSTGSASNKGHGDTGPVQQLVAMFGVLVAQGENAIRSLQILISSISADLLAEV
VMANMCNLPLNCSQADGDEESVLEMTIFGSDTGAKYPASFLADVLSLSSSFLPIASLLDE
QHSMANDAAKPQREEELLAPAVADGAVLFDGFTPEAEVAALPTGVVASSDVLPKKENSDL
SISSDNHDVGSLESDIPGLNSSACNDGFSETFVTSLLATKDIEDVSQEQETGERSLLDLP
SVSTDRSRSEETSPKAATTDPNSLIASTASSVTLSSPFALPKMSAPVVDLADEQKDQLQN
LAFMRILEAYKQVAVAGGSQIRFSLLAYIGVEFPSELDPWKPLQEHILEDYVNHEGQELT
LRVLYRLYGEAEEERDFFSSTTASAVYETFLLTVVCIAFQCSFHPSNETLQGINGFSQHF
KDLTNTRGPLPLFSLFLLQSGDRVTQGLSAVWSLILLRPPLRDVCLRIALQSAVHHLEEV
RMKAIRLVANKLYPLSSIAQQIEDFAREILLSVINVDSSERADANGSTIEALKDSDLEKP
SNDLVSVGALGKDISTDTHQSCTTQSASSLSIPQAQRCMSLYFALCTKKHSLFHQIFVIY
KDASTAVKQAVQRHIPILVRTMGSSSGLLEIISDPPSGSESLLMQVLHTLTDGTVPSPEL
IFTIRKLYDSKLKDVEILIPVLPFLPREEALLIFPRLVNLPLDKFQAVLARTLQGSSNSG
AQLSPAEVLIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLP
LLFMRTVLQAIGAFPALVEFVMEILSRLISKQIWKYPKLWVGFLKCAHLTQPQSFNVLLQ
LPPPQLENALNRIAALKAPLIAHASQLNIRSSLPRSVLAVLGIASDSQTSSQAQTSQGQT
GDINNSEKETMTDKSKEESSSAS
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgacgaattcgagctcgagagaaacatacgcgagtttagtattctcgacc
aaggcagccatggacataccattaaaactcgaatacttgcgtcgtttaaagcaagatttg
atcgaagaagaaaatgtcattgttatctcagaaattctccctcgtatcttcgaccttcaa
tccgattcctttgctccggttcgcaagtttgtcactgagattattggtgaagttggatta
aaacatgtgcagtttttacccgaaattatgcctgtacttatcagtgttcttgacgattct
gctccagctgtagctcgacaagctattacttgtggacttgatctatttcgttctaccctt
gtaaaacttgcaattcagggtctgcactcgagtgagttggacaattccgttgaatcatca
tggacatggatattaaagttcaaggagaagatatatttgatggcttttcagggaagtggt
ggggtaagattgctagcgttgaagtttgtcgaagcagttatacttctgtacacacctgat
cctaacggctctctaaaaccctctcctgatgaaggaaaccttgtggagttcaatatatct
tggcttcgtggtggccatcctgtactgaacatgggagatctatcaattgaggctggtgag
aagttgggattattgcttgatcagcttaggttcccaacagtaaaatctctcagtagctta
gtgattgttgttcttatcaatagtctttcagcaattgcaaagaaaaggcctgcatattat
ggacgcattttgccagttttacttgctctagatcctccaagttctgtcatcaaaggaatg
catctttctagtgctcatcatgctcttaaaaatgccctcctcagctgcttgaaatgtaca
cacccgggtgctgcaccgtggcgggatcgtctagttgatgccctgaaagagatgaaagct
ggagagctggcagagcgagccctaagtcaagtttgcaaggctaatggaagtgtggaagac
attaaaaatgatttgccagttattaaggaagagaaaccctccatccaggcctgtgatgat
gtgcgcactaacttgggaagaaagagatctggagcagacgacaacagtgatccagatgaa
gaaaatgaagtgtctggaaaacgtgtcagatcaacacttagtgtctcagaagaatcaagt
aaagctttgaataggaatattattgtgtctcaggatcaaattccgtcaactgggtctgcc
tctaacaaaggacatggtgatactggacctgtacagcagcttgttgccatgtttggtgtc
ttggttgctcaaggtgaaaatgccattagatccttacagattcttatttcaagtatctcg
gctgacttgctagctgaggtagtgatggctaatatgtgtaaccttcctctcaactgctct
caagctgatggagatgaagaatcagtactggaaatgactatatttggcagtgacactgga
gccaagtatccagcatctttcttggctgatgttctttcactttctagtagtttcctgccg
atagcttcactgcttgatgaacaacattcaatggccaatgatgcagcgaaaccacagagg
gaggaagaacttcttgcaccggctgtggctgatggtgctgttttattcgatggctttacc
cccgaagctgaagttgcagctttacctactggtgtagtggcttcttctgatgttttgccc
aaaaaggagaattctgatttatccatttcttctgataaccatgatgtgggaagtctagag
agtgatatacctggtctgaattcttctgcttgtaatgatggtttttcagagacctttgtt
acttccttattggccacaaaagacatagaagatgtcagtcaagagcaagaaactggtgag
aggtcactgcttgatttgccatcagtttcaacagataggtctaggtcagaagagactagt
ccgaaagcagctactacggatcctaacagtctgattgcctcaacagctacttctgtcact
ttgtcttctccttttgccctacccaagatgtcagcacctgttgttgaccttgctgatgag
caaaaggatcaattacaaaacttggcttttatgcgcattcttaagacatataaacaagta
gcagttgctgggggttcacaaatccgtttttctttacttgcttatataggagttgagggt
ctgcactcgagtgagttggacaattccgttgaatcatcatggacatggatattaaagttc
aaggagaagatatatttgatggcttttcagggaagtggtggggtaagattgctagcgttg
aagtttgtcgaagcagttatacttctgtacacacctgatcctaacggctctctaaaaccc
tctcctgatgaaggaaaccttgtggagttcaatatatcttggcttcgtggtggccatcct
gtactgaacatgggagatctatcaattgaggctggtgagaagttgggattattgcttgat
cagcttaggttcccaacagtaaaatctctcagtagcttagtgattgttgttcttatcaat
agtctttcagcaattgcaaagaaaaggcctgcatattatggacgcattttgccagtttta
cttgctctagatcctccaagttctgtcatcaaaggaatgcatctttctagtgctcatcat
gctcttaaaaatgccctcctcagctgcttgaaatgtacacacccgggtgctgcaccgtgg
cgggatcgtctagttgatgccctgaaagagatgaaagctggagagctggcagagcgagcc
ctaagtcaagtttgcaaggctaatggaagtgtggaagacattaaaaatgatttgccagtt
attaaggaagagaaaccctccatccaggcctgtgatgatgtgcgcactaacttgggaaga
aagagatctggagcagacgacaacagtgatccagatgaagaaaatgaagtgtctggaaaa
cgtgtcagatcaacacttagtgtctcagaagaatcaagtaaagctttgaataggaatatt
attgtgtctcaggatcaaattccgtcaactgggtctgcctctaacaaaggacatggtgat
actggacctgtacagcagcttgttgccatgtttggtgtcttggttgctcaaggtgaaaat
gccattagatccttacagattcttatttcaagtatctcggctgacttgctagctgaggta
gtgatggctaatatgtgtaaccttcctctcaactgctctcaagctgatggagatgaagaa
tcagtactggaaatgactatatttggcagtgacactggagccaagtatccagcatctttc
ttggctgatgttctttcactttctagtagtttcctgccgatagcttcactgcttgatgaa
caacattcaatggccaatgatgcagcgaaaccacagagggaggaagaacttcttgcaccg
gctgtggctgatggtgctgttttattcgatggctttacccccgaagctgaagttgcagct
ttacctactggtgtagtggcttcttctgatgttttgcccaaaaaggagaattctgattta
tccatttcttctgataaccatgatgtgggaagtctagagagtgatatacctggtctgaat
tcttctgcttgtaatgatggtttttcagagacctttgttacttccttattggccacaaaa
gacatagaagatgtcagtcaagagcaagaaactggtgagaggtcactgcttgatttgcca
tcagtttcaacagataggtctaggtcagaagagactagtccgaaagcagctactacggat
cctaacagtctgattgcctcaacagctagttctgtcactttgtcttctccttttgcccta
cccaagatgtcagcacctgttgttgaccttgctgatgagcaaaaggatcaattacaaaac
ttggcttttatgcgcattcttgaggcatataaacaagtagcagttgctgggggttcacaa
atccgtttttctttacttgcttatataggagttgagtttccctcagagttggacccatgg
aaaccactacaggagcacatcttggaagattatgtgaatcatgagggacaagagttgaca
ttgcgtgtactgtacagattatatggagaggcagaagaggaacgtgacttcttttcttct
acaactgcttctgctgtatatgaaacattcctattgactgtggtatgtattgctttccag
tgttcatttcatccatctaacgaaacacttcaagggataaacggtttcagtcaacacttt
aaagatcttacgaacacaagaggacctttaccactattctcactgttccttttacagagt
ggagaccgagttactcaaggtctcagtgctgtatggagcctaatcctgctgaggcctcct
ttgcgagatgtctgcttgagaattgctttgcagagtgcagttcatcacttggaggaagtg
cgcatgaaggcgatacgactggtggcaaataagctttatcctttatcatccattgctcaa
caaatagaagattttgcccgggaaattttgctttctgtaataaatgtcgattcttcagaa
agagcagatgccaatggatcaactattgaagcactcaaggattctgatttggagaaacca
tcaaatgatcttgtgtcagtcggtgccttaggtaaagacatttccactgatactcatcag
tcatgcacaactcagagtgcatcatccctttcgatcccccaggcccaacgatgcatgtcg
ctttattttgccctgtgtacaaagaagcactcactttttcaccaaatatttgttatctac
aaagatgcatcaacagctgtcaaacaggcagtccaacgtcatatcccaatactggttcgt
actatgggttcatcatctggactactcgaaattatttcagatcctccaagtggaagtgag
agcctcctgatgcaggttttgcatacactgacagatgggacagttccatcaccagaattg
attttcactattaggaagttatatgattctaaattaaaggatgtagaaattctaattcca
gtattgccattcctgccgagagaggaggccttgctgatatttccgcgtcttgtcaatctt
cctctagacaagttccaggcagtacttgctcgtacactacaggggtcatctaattctggt
gcgcagctctctccagctgaagtgttgatagctatccatggaattgatcctgacagagat
ggaattcccttgaagaaggtcacagatgcatgtaatgcttgttttgagcaacggcagatc
ttcacccaacaagttcttgcaaaagtcttgaatcaattggttgagcagattcctctaccc
ttattgttcatgcgtacagtattgcaagctattggtgcttttccagcactggtggaattt
gtaatggagatcctttctcgtcttattagcaagcagatatggaagtacccaaagttgtgg
gtagggttcttgaaatgtgcacacctgacacagcctcagtcattcaatgtgttgcttcag
ctaccgccaccacagctggaaaatgcattgaatagaatagctgcacttaaggctcctttg
atcgctcacgcaagccaactaaatatccgctcttcacttccaagatctgtgttggccgtt
ttgggaattgcttcagattcccagacttcaagtcaggcacaaacaagccagggacagact
ggagatataaacaactcagagaaggagacgatgacagacaaatctaaagaagaatcatcc
agtgctagttga
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integrated database retrieval system
