Pistacia vera (pistachio): 116116635
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Entry
116116635 CDS
T07386
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116116635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116116635
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116116635
Spliceosome [BR:
pvy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116116635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
AAA_22
DEAD
AAA_19
AAA_30
PWI
T2SSE
nSTAND_NTPase5
nSTAND3
Cas3-like_C_2
AAA_16
Flavi_DEAD
TsaE
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
116116635
NCBI-ProteinID:
XP_031258553
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MGSDLALKTWISDELMSLLGYSQPTIVQYIIGLSKQATSPDDLRTKLEEECDFPKSGDTT
LRFAQEVFHKVPRKESGLNLYQKQEREAALLVRKQKSYMILDADDDGDTVNVDESRKVGS
HKKRFRKKTGIEEDDGDEGIAHVEEKRLVKRRTSKDEDDDSDSEEERLRDQREREQLEQH
IRERDAAATRKLTETKLSRKEEEEAIQRSNALEKNEMEYLRKISRREYLKKREQKKLEEI
KDDIEDEQYLFENVKLTDAEYREIRYKKEIYDLVKKRTEEVETLSEYRMPEAYDQDGNVD
QEKRFAVSLQRYSQDNAGEKMNPFAEQEAWEEHQMGKADMKYGSKNKKQISDDYQYVFED
QIDFVKASVMDGDEFDEQPNELLDKPKEKLASEMLQEERKTLPIYPYRDQLLQAVQEYQV
IVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG
YSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKD
LIKFRSDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVT
VLQVHVTQPSGDILVFLTGQEEIETMEEILKHRTRGLGTKIAELIICPIYANLPTELQAK
IFEPTPAGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPRTGMESLLVNPISKAS
AMQRAGRSGRTGPGKCFRLYTLYNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNF
DFIDPPPEEALLKALELLFALSALNKFGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSD
EIITVAAMLSVGNSIFYRPKDKQVHADNARMNFHLGNVGDHIALLRVYNSWRECNYSTQW
CYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLGDLDSIKKAITSGFFPHSAKLQKN
GSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPDWLVEIAPHYY
QMKDVEDPASKKMPRGAGRAS
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgatcttgctttaaagacgtggatatctgatgagctgatgtcgctgcttgga
tattctcagcccactatagtccaatacatcatcggattatctaagcaagctacttcccct
gatgatttgagaaccaagctagaggaggaatgtgattttcctaaatcaggggataccacc
cttagatttgctcaagaagtcttccataaagttccccgtaaagaatctggtttaaatcta
tatcagaaacaggaaagggaagctgctctgttggtgaggaagcagaagagttacatgatt
ttggatgccgatgatgatggtgataccgtaaatgttgatgagtccaggaaagttggttca
cataagaaacggtttagaaagaaaactggaattgaagaagatgacggagatgaggggatt
gcgcatgtggaagaaaagagactggttaaaagacggacttccaaggatgaagatgatgat
tctgattccgaggaagagagattgcgtgatcaaagagaaagggagcaattagagcaacat
ataagagaacgtgatgctgcagcaacaaggaagttaactgagacaaagttaagccgaaag
gaggaagaagaggcaattcaaagatcaaatgctttggagaaaaatgaaatggaatattta
aggaaaatttcaaggcgggaatatctaaagaaaagggagcaaaagaagctggaagaaatc
aaagatgatatagaagatgagcaatatctatttgaaaatgtgaagcttacagatgcagaa
tatcgtgaaataaggtacaagaaagaaatctatgatcttgttaagaagcggacagaagag
gttgaaactctgagtgagtaccggatgccggaagcttatgatcaggatggtaatgttgat
caagaaaagcgatttgctgtgagtctgcagcgttatagccaggataatgctggggagaaa
atgaacccttttgcggagcaagaagcttgggaggagcatcaaatgggaaaggcagacatg
aaatacggttcaaaaaacaagaagcaaatatccgatgactatcaatatgtgtttgaggac
cagattgactttgtcaaggcatctgtgatggatggcgatgagtttgatgagcagcccaat
gaattgcttgacaagcccaaggagaaattagcctcggagatgcttcaggaggagaggaaa
accttacccatctatccatatcgggatcagttactccaagctgttcaagaatatcaggtc
attgttatagttggagaaacaggttctgggaagactacacagataccccaatatcttcat
gaagctggttacaccaagcagggaaaggttggttgtacacagccacgacgagttgctgct
atgagtgttgctgctcgcgtttctcaagaaatgggagtcaaacttgggcatgaggttgga
tattccattcgttttgaagattgcacatcagagaagactattctgaaatacatgacggat
ggaatgctgttacgtgagattctcagtgaaccaaacctagaaagctacagtgtgttgatg
gtggacgaggctcatgaaagaactctgtcgactgacattttatttggattactaaaggat
ttaattaagtttcgatcggatctcaaactgcttatctctagtgcaacgcttgatgcggag
aaattcagtgattattttggttctgctccaattttcaaaattcctgggaggcggtatcct
gttgaaattcattatacgaaagcaccagaagctgattatatagatgctgcaattgtcaca
gtgctacaagtccatgtaacacagccttctggagatattttagtttttttgactggtcag
gaagaaatcgaaacaatggaagaaatattgaaacataggacaagaggcctggggacgaaa
atagctgaactgattatctgccctatatatgcaaatctaccgactgagcttcaagctaaa
atatttgaaccaactcctgcgggggctcggaaagttgtgcttgcaacaaatattgcagaa
acttcattgacaatagatggaattaagtatgttattgatccaggtttcgccaaggtgaaa
tcttataatccaaggactggaatggagtctttgctagtcaatcccatctcgaaagcttca
gccatgcaacgtgctggtcggtctggacgaacaggtccaggaaaatgttttcgattgtat
actctttacaattatcacaaggatatggatgataatacagttccagaaatacaacggact
aaccttgcaaatgttgtcctaattcttaagagtcttggaattgatgacttggtaaacttt
gattttatagaccccccaccagaggaagcattgctgaaagccttggaactactttttgcc
cttagtgcattgaacaagtttggtgagttgactaaagttggcaggcggatggcagagttc
cctcttgatcctatgttgtctaagatgattgttgcttctgataagtacaagtgttctgat
gagatcattaccgttgctgctatgctttctgttggaaattcaatcttctatcgtccgaag
gacaaacaagttcatgcagataatgcaagaatgaactttcacttagggaacgttggggat
catattgcgttgcttagggtttacaattcttggagggaatgtaattactccacacagtgg
tgttatgagaattatattcaggtgaggagtatgaaacgtgccagagatatcagggaccag
ctagaggggcttctggagagggttgaaattgaactaacatccaatctgggtgatttagat
tccataaagaaggccattacatctggttttttccctcattctgcaaagctgcagaaaaat
ggatcttactggacggtaaaacatccacaaagagttcatatacatcccagctcagggttg
gcacaggtgctgcctagatgggttgtgtaccatgaattggttctgacgaccaaagaatat
atgagacaggtaactgaactaaaaccagactggttggttgaaatagccccccattattac
cagatgaaggatgttgaagatccggcgtccaagaagatgccacggggagcaggacgtgca
tcataa
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