Pistacia vera (pistachio): 116117642
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Entry
116117642 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116117642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116117642
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
116117642
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
116117642
NCBI-ProteinID:
XP_031259529
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MDSTLPIAKRTRSREAIMYKKIHEEIKKRKLDSGRTEAVAKSESSYYQVRSVKGENLGSG
SVACKEVVDVEGVESLSGHDATFVCVEDSGEENKGNPQMGVKEGTDDEVIALDDSDSEDG
VLFLGEECDLGVEECDEDVDEEEDDVFGGQGSGVSVDSSDELFSSSEEEDNDDPDYEDYG
PEKSETSDSVAESSSEDEGVIFVEERVFAKGASKGKVVEEKDGMEDLVDSENSKNNGISE
EYNEFDNVNQSLNSVAKRTRSCFNSENSERKTKLRRTLSMDAEKLESRRFVDNDNDKVSR
SVKKTGPTKFSNRNHILKYNDVQKILLNSILGAEEIGCETSLSARSDGSDFDSESGIEES
TPPEKTESEEEMDRLWNELNFGLTCSEIHSTYPAKAVKNDGLLECSLDKFDKASSSALLC
CHSEVVEHGAKPSQEVEDETPQCSHGTHEFVIDEEVGILCKFCSFVKVEVKYISAPFFKR
ASGYSERKDSTMGHSMLDDLRNNGSGFNSQAASDSSSQAEATVWDTIPGVKGSMYPHQRE
GFEFIWTNLAGGIKLDELKTQTSSMRGNGCIISHAPGTGKSRLTIVFLQSYVNLYPNCKP
VIVAPRSMLLTWEEEFQKWKVDIPFHNLNNPELSGKEDAYALNVMNRAKVRHGERKRNLI
RQVKLYSWNTKGSILGISYQLFARLVGIDKKGGEPCKEVDEDVRKILLDFPGIFVFDEGH
TPRNHESGIFKALSKVKTEKRIILSGTPFQNNFEELYNILCLVAPKFADSTQSKVVKKRG
RKPNEAKEKWASLTSSIGKVSSDRXQDEDKNLKELKTMIAPIVHIHKGTVLKESLPGLKH
SLVVLQPDDFQKSLLEGVKRSYHQQSGGFQRSKSFLTLDHIVSVTSVHPSLLPEQCYEEE
EFVVHKVKLEKLRLNAEAGIKTKFFMMLLKLSAAMNEKGKEVLYMDGKRDLKERQSSIRV
FNDPKSEAKVLLASTRACGEGINLVGASRVVLLDVTWNPAVERQAISRAYRLGQKKFVYV
YHLITSGTMEESKCCRQARKERYSELVFSSSDGSGNQQKSASEELEDRVLEEMLQHHKFV
EEIIEQPEESKLIETLGLTKASINLE
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggattctactttgcctatagcgaagaggacccgttctagagaggctatcatgtataag
aagatccatgaggagatcaagaaacggaaactagatagtggtcggaccgaggcagtggcg
aagagcgaatcaagttattatcaagttagatcagttaagggtgagaatctaggatcagga
tctgtagcttgtaaagaagttgttgatgtagaaggtgtagaatcattgagtggacatgat
gctacttttgtgtgtgtagaggattctggggaggagaacaaaggtaatcctcaaatggga
gtaaaagagggaactgatgatgaggtgattgcgttggatgacagtgacagcgaggatggg
gtgctgtttttaggggaagaatgtgatttaggggtagaagagtgtgatgaagatgttgat
gaggaagaagatgatgttttcggtggccaagggtcaggggtgagtgtggacagttcagat
gagctgttttcatccagtgaagaggaggataatgatgatcctgattatgaagactatgga
cctgaaaagtctgaaacttctgatagtgtagcggagtcatctagtgaggatgaaggtgtg
atttttgttgaggagagagtgtttgcaaagggagcaagtaagggcaaagtggttgaagag
aaagatggaatggaggatttggttgattctgaaaacagcaaaaacaatggcattagtgag
gaatataatgaatttgataatgtcaatcaatcgctgaactctgtggctaaacgcactaga
tcatgctttaattctgaaaattcggaaaggaaaacaaaactcaggcgcacattgagcatg
gatgcggagaagctggaatctcgtaggtttgttgataatgacaatgacaaagtgtctcgc
agtgttaagaagacagggcctacgaaattctccaatagaaaccacatcttgaagtataat
gatgtgcaaaagattcttttgaattccattttgggcgcggaagaaattggctgtgaaact
tctttatctgctagaagtgatggaagtgattttgattctgaatctggaattgaggaatca
actcctccagaaaaaacagaatctgaagaagaaatggatagactttggaatgagttgaac
tttggtctcacttgctctgagatacattccacttatcctgccaaggcagtaaaaaatgac
gggttattggaatgttcattggataaattcgataaagcaagttcaagcgctttactttgt
tgccactctgaagtggtggaacatggtgcaaaaccatctcaagaggtcgaagatgaaact
ccccaatgttctcatggaactcatgaattcgtcattgatgaagaagttggaattttatgc
aagttctgctccttcgtgaaagtggaggttaaatacatttcagcacctttttttaaacgt
gcttcaggatactctgagcggaaggactcgacaatgggtcactctatgcttgatgatctc
cgcaataatggctctggtttcaactcccaagctgcctcggattccagttctcaagcagaa
gccacagtgtgggacactattcctggtgtaaaaggtagcatgtatcctcatcaacgtgaa
ggttttgaatttatttggactaatttagccggaggaataaaactggatgaactgaaaaca
caaacaagctccatgaggggaaatggatgcattatatcacatgctccaggaacagggaaa
tctcgtcttactattgtgtttttgcagagctacgtgaatttatatccaaactgcaagccg
gttattgttgctcctcgcagtatgctgcttacctgggaagaagagttccagaagtggaaa
gttgatattccctttcacaatctcaacaatccagagttatctggcaaggaagatgcttat
gctctcaatgtaatgaacagggccaaggttagacatggggagcgcaaaagaaaccttatc
cgacaggtgaagctttactcatggaacacaaagggaagcattttgggaattagttaccaa
ctctttgcacgacttgttggtattgataagaagggtggagagccctgcaaggaagtagat
gaggatgtgagaaaaatccttcttgattttccgggtatttttgtctttgatgaaggacac
acacctcggaatcatgagagtggtatttttaaggctctgtcaaaagttaaaacagaaaag
cgcatcattctctctgggactccatttcagaataactttgaagaactatataatattctg
tgtttggtggcgccaaagtttgcggattcaacgcaatccaaagtagtcaaaaagcgtgga
cgcaagccgaatgaagccaaagagaaatgggcttctctgaccagctccatcggcaaagtt
tcttctgacagatgacaagatgaagacaagaatttgaaagagcttaaaactatgattgcc
ccaattgtgcatatacataaaggaactgttttaaaagaaagtctgcctgggttgaagcac
tctttggttgttttacagccagatgatttccagaagagcctccttgaaggtgtcaaaaga
tcttatcatcagcaaagcggtggttttcaaagatcaaaaagctttcttaccttggatcat
attgtgtctgtgacatctgtgcatccttccttgttgcctgagcaatgctacgaggaagag
gagtttgttgttcacaaggttaagctggaaaagcttagactgaatgctgaggcaggaatc
aaaaccaagtttttcatgatgcttctcaaacttagtgctgctatgaatgaaaagggcaag
gaggtgctatatatggatgggaagcgagatttaaaggagcggcagtcgtcaatcagagtg
ttcaatgatccaaagagtgaagcaaaggtattgcttgcctcaacaagggcttgtggtgaa
ggaataaatcttgtgggggcttcgcgggttgtgttgcttgatgttacctggaatccggct
gttgaaagacaagctataagcagagcatataggcttggtcagaaaaaatttgtgtatgtt
tatcatctgattacgtcggggactatggaagagagtaaatgttgtagacaagcgagaaag
gaacgatattctgagttggtattctcttcttcagatggaagtggcaatcagcagaaatct
gcaagtgaagagttagaggatagagttttggaagagatgttgcaacatcacaaattcgtt
gaggagataattgagcagcctgaagagtctaagttgattgagactctcggcttaacgaaa
gcctccatcaacttagagtag
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