Pistacia vera (pistachio): 116119607
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Entry
116119607 CDS
T07386
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116119607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116119607
03009 Ribosome biogenesis [BR:
pvy03009
]
116119607
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116119607
Spliceosome [BR:
pvy03041
]
Complex A
U1 snRNP components
U1 related factors
116119607
Complex B
116119607
Ribosome biogenesis [BR:
pvy03009
]
Eukaryotic type
Pre-60S particles
Helicases
116119607
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
116119607
NCBI-ProteinID:
XP_031261408
LinkDB
All DBs
Position
Unknown
AA seq
610 aa
AA seq
DB search
MNPYDHRYADPDSYRQRRSDLMGPPPQIGPMGRDGPSPYGGPPPAAGFSGKGPGVAGGSV
SGVYQPVGRFDVGRGGGGRGFSSSRGHSSDRRGGGRGRDSGGRGFDSGRGGGRAGGARGR
GGRHGGGSYRDDLDNISLPKQDFGNLVPFEKNFYVESPSVRAMTETEVKMYRARREITIE
GHDVPRPIRMFHEANFPDYCLEVIAKLGFVEPTAIQAQGWPMALKGRDLVGIAETGSGKT
LSYLLPALVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGLRAGIRSTCIYGGA
PKGPQIRDLRRGVEIVIATPGRLIDMLDAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKI
VAQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSTDLKANQSINQVVEVLTESEK
YNRLIKLLKEAMDGNRILIFTETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLAEF
RSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTH
SNAKFARDLIKILQEAGQIVNPSLSSLARSSGSSFGGSGGHFRSRGRGGFAHRSSISESN
TIPLGSRRAW
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgtacgatcacagatatgccgaccccgactcttaccgtcaacggcgtagcgat
ttaatgggcccaccacctcaaattgggccaatgggccgggacgggccttctccgtacggg
ggtcctccgccggcagctggtttttctggaaaaggtcctggagttgctggcggatccgtt
tccggtgtgtatcaaccagtcggtagattcgatgttggtcgtggcggcggtggaagggga
tttagtagtagtagaggccatagttcagatagaagaggcggtggacgtggtcgtgacagt
ggagggagaggctttgactcgggccgcggtggtggtagagctggtggagctcgtggaaga
ggaggtagacatggtggtggttcttatcgggatgacttggataatatttcgcttccgaaa
caagatttcggaaatttagttccttttgagaagaacttctatgttgaaagcccttctgta
cgtgcgatgacggaaacggaggttaagatgtatcgtgctaggagggagattaccattgaa
ggtcatgatgttcctaggccgattcggatgtttcacgaggcgaatttccctgattactgc
ctagaggtcattgcaaaattaggatttgttgagccaacggccattcaggctcagggttgg
cctatggctttgaagggtagagatttagttggcattgcagagactggttcgggcaaaact
ttgtcatatctgttacctgctttggttcatgtcagtgctcagccaagattggttcaaggt
gaaggtcctattgtgttagtattagcacctactagagaattagctgttcaaatacaagaa
gaagctctgaaatttgggttacgggcaggtattagaagtacttgcatctatggtggtgct
cctaaagggccacaaattcgtgatcttcgaagaggtgttgaaattgtcattgcaacccct
ggtcgactgatagatatgttggatgctcaacacacaaacttgcgaagagtgacttacctt
gtgttggatgaggctgatcggatgttggacatgggatttgagcctcagataaggaaaatt
gttgctcagatccgacctgataggcagactttgtattggagtgctacatggccaagggag
gttgaaactctagcaaggcagtttctgcgcaatccatacaaggtaatcattggatcaaca
gatctaaaagcgaaccaatctataaatcaagttgttgaagttctgacagagtcagagaag
tacaacaggctgatcaaactactgaaagaagcgatggatgggaatcgaattctaatattc
acagaaaccaaaaaggggtgtgaccaaattacaagacaactaagaatggatggatggccg
gctctgtccattcatggtgataaaaaccaggctgaaagggattgggttctcgctgaattt
agaagtggaagaagtcctataatgactgctactgatgttgctgcacggggtcttgatgtg
aaggatataaaatgtgtggtcaattatgattttccatccagccttgaggattatgttcac
cggattggccgaactggtcgtgctggggccaaaggaactgcttttaccttttttacacat
tcaaatgcaaagtttgctagggatctaatcaagatcttgcaagaggcaggacaaattgtg
aacccctcattatcatccttggcacgttcttctggttctagttttggcggttctggggga
cacttccgctccagagggcgaggaggctttgcccaccgatcttcgatttcagagtctaat
actattcctttaggttcaaggagggcgtggtaa
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