Pistacia vera (pistachio): 116120265
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Entry
116120265 CDS
T07386
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116120265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116120265
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116120265
mRNA degradation factors
5'-3' decay
Lsm complex
116120265
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
116120265
NCBI-ProteinID:
XP_031262072
LinkDB
All DBs
Position
Unknown
AA seq
128 aa
AA seq
DB search
MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLESACDRVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSVAEIRRAQKAEREASDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccagatgatgtttatctctctacttctcttgccagttacttagac
aagaaactacttgtattgcttcgtgatggtcgaaaacttatgggtacactttgttcattt
gatcaatttgccaatgccgttcttgagagtgcatgtgatagagttattgttggtgacctt
tactgcgacatcccattaggtctatatgtgatccgtggggagaatgttgttttaattggt
gagctggacttggagagggaggagcttcctccacacatgactcgcgtttcagttgcagaa
attagaagggcacaaaaagcagagagggaggcatcagatctcaaaggtacaatgaggaaa
agaatggagttcctggatttggactag
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