KEGG   Pistacia vera (pistachio): 116120265
Entry
116120265         CDS       T07386                                 
Name
(RefSeq) sm-like protein LSM1B isoform X1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pvy  Pistacia vera (pistachio)
Pathway
pvy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116120265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvy03019]
    116120265
Messenger RNA biogenesis [BR:pvy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116120265
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116120265
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 116120265
NCBI-ProteinID: XP_031262072
LinkDB
Position
Unknown
AA seq 128 aa
MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLESACDRVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSVAEIRRAQKAEREASDLKGTMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaggcccagatgatgtttatctctctacttctcttgccagttacttagac
aagaaactacttgtattgcttcgtgatggtcgaaaacttatgggtacactttgttcattt
gatcaatttgccaatgccgttcttgagagtgcatgtgatagagttattgttggtgacctt
tactgcgacatcccattaggtctatatgtgatccgtggggagaatgttgttttaattggt
gagctggacttggagagggaggagcttcctccacacatgactcgcgtttcagttgcagaa
attagaagggcacaaaaagcagagagggaggcatcagatctcaaaggtacaatgaggaaa
agaatggagttcctggatttggactag

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