Pistacia vera (pistachio): 116122518
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Entry
116122518 CDS
T07386
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03030
DNA replication
pvy03410
Base excision repair
pvy03420
Nucleotide excision repair
pvy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116122518
03410 Base excision repair
116122518
03420 Nucleotide excision repair
116122518
03430 Mismatch repair
116122518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvy03032
]
116122518
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116122518
DNA replication proteins [BR:
pvy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116122518
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116122518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
RCF1-5-like_lid
AAA_30
AAA_19
PTCB-BRCT
Rad17
Gp44_lid
BRCT_2
AAA_assoc_2
nSTAND3
AAA_14
RuvB_N
AAA_5
Zeta_toxin
Sigma54_activ_2
AAA_16
RsgA_GTPase
AAA_17
AAA_18
TsaE
DNAX_ATPase_lid
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
116122518
NCBI-ProteinID:
XP_031264223
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MPQDIRKWFLKPHDKDKGNGNGSISANSAPSNSEPMNSEPFRGGKEGSGRRKTSKYFTAE
KQKLDDEKGKAELPAKRKTQNDIDDSRKSPRSRKIQKVDDNDDDFVLPNEKRGSSVTPRK
KLKSSSGRGVAQKSVCVDDGDEDNVKDLEPPVKPSGRGRGGRASGSPAIGRGRVGGQGGI
MNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS
KKTNYLLCDEDIGGVKSTKAKELGTAFLTEDGLFDMIHASNPAKALAQDDSKKSVENVAT
SLPLKRSPQKVEVKSNSSATKVACESTISCASPVKKKKQNIQDSSLTWTEKHRPKVPNDI
VGNQSLVNQLRNWLAHWNEQFLGSGTKQNGKKKIDPSAKKAVLLSGAPGMGKTTSAKLVT
QMLGFQAIEVNASDSRGKADSKISKGIGGSNANSVKELVSNEALNSKMDRSKHPKAVLIM
DEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQM
AKRLMQIANAEGLQVNEIALEELAERVNGDMRMAINQLQYMSLSMSNIKYDDIRQRLLSS
AKDEDISPFAAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLLIQENYINYRPSSGGKDEM
KRMSLIARAAESIGDGDIVNVQIRRYRQWQLSQTGCLASCIIPAALLHGQRETLEQGERN
FNRFGGWLGKNSTTGKNLRLLEDLHVHLLASRESNSGRETLRLEYLTLLLKQLTDPLREM
PKDEAVKKVVDFMNVYSISQEDFDTIVELSKFQGHGNPLEGIPPAVKAALTRAYKEDSKL
RMVRAADLVTLPGKKAPKKRIAAILEPSDEGIGEENGGMLADSEEENSSDTEDPDAGNGE
KMQKELQSLNSKGIEVQVELKGSESSSAKKKAAGRGKGGSASSEKKGNSGSMDKKAGRGS
GAAAKRKR
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagatattaggaagtggtttcttaaaccacatgacaaagacaaaggcaatggc
aatggctcaatctctgcaaattctgcaccaagcaattcagagccaatgaattcagagccc
tttcgtggaggcaaagaaggttcaggtagaagaaaaactagcaagtattttactgctgag
aaacaaaagctagatgatgaaaaaggaaaagcggaacttccagctaagaggaaaacacaa
aatgatattgatgattcccgtaaatctccacgatcaaggaaaattcagaaagttgatgac
aatgatgatgactttgtcttgccgaatgagaagaggggctctagtgtcactcccagaaag
aaattgaagtctagttcaggtaggggagttgcacagaaatctgtatgtgttgatgatggt
gatgaggataatgttaaagatttagagcctcctgttaagcccagtggaaggggtcgtggt
ggtagagcatcagggtcaccagctattggaagaggcagagttggtggacaaggtggaatt
atgaatttcggggaaaggaaagatcctccacacaaaggagaaaaggaagtccctgaaggt
gctcctgactgcttagctggtttgacttttgtaattagtggaacacttgacagtttggaa
agggaagaggctgaagatttgattaaacgccatgggggacgtgttactggatcagtcagc
aagaaaacgaattatcttttatgcgatgaagatattgggggagtgaaatcaactaaagcc
aaagagcttggtactgctttccttacggaggatggattgtttgatatgatccatgcatca
aatccagcaaaagcacttgcacaagatgattcaaagaaatcagtggagaacgttgctaca
tctctgcccctcaagcgaagtccccaaaaagtcgaagtgaaaagcaactcttcggcaaca
aaggtagcctgtgaaagtacaatctcatgtgcttctcctgtaaagaagaaaaagcaaaat
atccaggattcttcgttgacatggacagaaaagcataggccaaaggttccgaatgacatt
gtcgggaatcagtcactggttaatcagcttcgtaattggttggcacattggaatgaacaa
tttcttggtagtggaactaagcaaaatggaaagaagaaaattgatcctagtgccaaaaag
gccgtgcttttaagtggagcacctggtatgggaaaaacaacatcagcaaagttggttact
cagatgctgggtttccaggcaattgaggttaatgctagtgatagccgtgggaaggctgat
tccaaaatttcaaagggaattggtggaagcaatgcgaattctgtcaaggaacttgtcagc
aacgaggcattgaattctaaaatggatcgttccaagcatccaaaagctgtgctgattatg
gatgaggttgatggaatgtcagctggagatagaggtggagttgctgatcttattgctagc
ataaagatctccaaaattcctattatctgcatatgtaatgaccgctacagtcagaaactt
aaaagtcttgtaaactattgcttgcttctcagttttcggaaacctacaaaacaacagatg
gctaagaggttaatgcaaattgcgaatgctgaaggtcttcaggttaatgagattgctctc
gaggaacttgcagagagagtgaatggagatatgcgcatggccataaaccaactgcagtat
atgagtctctccatgtcaaacatcaagtatgatgacataagacagcgccttcttagtagt
gccaaggatgaagatatttcaccatttgcagctgttgataagctgtttggctttaatggg
ggaaggttgagaatggacgagcggattgacctgagcatgagtgatccagacctagtccct
ctacttattcaggaaaattatattaattataggccaagttcaggtggtaaggatgaaatg
aagcgaatgagcttgattgcccgtgctgctgagtctattggcgatggggatatagttaat
gtgcaaattcgaagatatcgacagtggcagctctctcaaactggttgtcttgcatcttgt
atcattcctgctgctttgttgcatggacaaagggagacgcttgaacagggagaaaggaat
tttaacagatttggtgggtggctgggaaagaattcaacaacgggtaaaaatttgaggctt
ttggaagatttgcatgttcatcttcttgcttctcgtgaatctaattcgggaagggagaca
cttcgacttgagtatcttactctccttttgaaacaattaactgatccactgcgtgagatg
cctaaggatgaagctgttaagaaggttgtggattttatgaatgtttactcaataagccag
gaggactttgatactattgtggagctatcaaaatttcaggggcatggaaatccgctggaa
ggcattccaccagctgtcaaagctgctttgactagagcatataaagaagatagcaaattg
cggatggtaagagctgcagatctagtcacacttcctggaaagaaggcacctaagaagcgg
attgctgcaattctggaaccatctgatgaaggaattggagaggagaatggtggtatgttg
gctgatagtgaagaagaaaattcttcagacacagaggacccagatgcaggaaatggtgag
aagatgcagaaggaattgcaaagtctgaattcaaaaggaattgaagtacaagtggaattg
aaaggaagtgaaagttcaagtgccaagaagaaggcggcaggcagagggaaaggtggctct
gcatcctctgagaagaaaggtaattctggatccatggataagaaagctgggcgtggctca
ggggctgcagccaagagaaagagatga
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