Pistacia vera (pistachio): 116122646
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Entry
116122646 CDS
T07386
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03013
Nucleocytoplasmic transport
pvy03015
mRNA surveillance pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116122646
09122 Translation
03013 Nucleocytoplasmic transport
116122646
03015 mRNA surveillance pathway
116122646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116122646
03041 Spliceosome [BR:
pvy03041
]
116122646
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116122646
Spliceosome [BR:
pvy03041
]
Complex C
Other components
EJC/TREX
116122646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
116122646
NCBI-ProteinID:
XP_031264329
LinkDB
All DBs
Position
Unknown
AA seq
803 aa
AA seq
DB search
MSSPYPILDNKPIDQWKVTELKEELKRRKLKSSGKKEELIRMLDNAIRIEREKAAKEAEA
DNGVNSVTQPVVGVKDAEKVPVDTGIAKDVVIVGSKENEKVDNVVVQLDMNSSAAALGQG
EVENIELAGNSNKNDAALGQEKIQESDITGDTNPPRVEEELVIRKTTVETSTTVTKSLVT
ELAFSGQELHNSGTPGESLNSNVQLEIEDPKPQLENEGLKPLHKDDILDTAAPDNQVSEV
SANLGSQVKSDSISTDSVSINEKIELKDNIIADNVKLEQDVIKQEMVEPSSSNIVPVGGE
SHPMDVEEPLERKASIEERDDSNATIADMGKKNDSADVGYSEKLNLDRSSGDDSMEEDVL
ESKQIDSKDSFDEVRDRSEKDEVSVVKEDSPVDVVGDGLSDDKKDVQVENKSRPVVAAEK
RKINDQETVGSNEPLKRQRRWNSESLKLPEQQSSNLTPTTTPRDTFQSSASKRNLSRSDS
AVSDDTPKERVVPPSPKPPTNSLRIDHFVRPFTLKAVHELLGKTGTFTSFWMDHIKTHCY
VTYTSVDEAMETRKALYNIQWPPNNGGRLLVAEFVDPQEVKMRAEAPPQSPAAPTPPAPA
PPASQPQPSPRQPAPRQQLPPPPTLPPPPPPVSNPAPARERFTLPPPPPLPEKIDPPIVT
LDDLFRKTKATPRIYYLPLSEEQVAAKVQSRSKNTKQSAGVTTTCRKELFQPSLGILFVD
GFRFGFSEGCACLRLMFYLVLETSSPYKAESFCGVVCLVFLLNQNSKFYELLVMLLDHIS
NFWMIFSFPFKFGLHCRFCNNFD
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctccatatccaattcttgacaataaaccaattgaccagtggaaggttacagaa
ttgaaagaagagctaaagaggcggaagttgaaatcaagtggtaagaaggaggagttgata
cgaatgttggataatgccattcgcattgaacgggaaaaggctgcaaaggaagcagaagcc
gataatggtgttaatagtgttacccaaccagttgttggtgtaaaagatgcagagaaagtg
cctgttgatactggaatcgctaaagatgttgtgattgttggtagtaaagaaaatgaaaag
gtggataatgtcgtggttcagcttgacatgaacagtagtgctgctgcattgggtcaagga
gaggttgaaaacatagaattagcgggtaatagtaacaaaaatgatgctgccttaggtcaa
gagaaaatccaagaaagtgacataacaggtgataccaaccctcctagagtggaggaggag
ctggttatccgtaaaactactgtggagaccagcactacagttactaagagtttggttact
gaattagcttttagtgggcaagagttgcataactctggaacaccgggagagagtttgaat
tcaaatgttcagctggagattgaggatccaaagccccagctggagaatgagggtttaaag
cctctgcacaaggatgacattcttgacaccgctgctccggataatcaggtatctgaggtc
agcgctaatttagggtctcaagtaaaatctgattctatttctactgattctgtgtcaatt
aatgaaaagattgaactaaaggataatataattgctgataatgtcaaattagaacaagat
gttattaagcaggagatggtggaaccatcatctagcaatattgttccagttggtggtgaa
tcacatccaatggatgttgaagagccacttgagaggaaggcatctattgaggagagagat
gacagcaatgctacaattgcagacatgggcaagaaaaatgatagtgcagatgtgggttat
tcagaaaagttaaatttagatcgaagctctggtgacgactctatggaggaggatgtcctg
gagagtaaacaaattgattcaaaggatagttttgatgaagtgagggacagaagtgagaaa
gatgaagtgtctgttgtgaaagaggatagtcctgttgatgttgtcggagatggtttgtct
gatgacaaaaaggatgttcaagttgagaataagagtcgtccagttgtggctgctgagaaa
agaaaaattaatgatcaagaaacagtgggaagcaatgagcctttgaagaggcaacgcaga
tggaactctgaaagcctcaagcttccagaacagcagagttctaatcttacacctaccacc
acgccgagggacacatttcaatctagtgcttcgaaacggaacctctctagatccgattcg
gcagtcagtgatgatacacccaaggaacgtgtggttccaccttcacctaaacctccaact
aattccctcaggattgatcattttgtgcgtccttttactctaaaagctgtgcatgagctt
ctgggcaaaactggaactttcaccagtttctggatggaccatatcaagacccattgctat
gttacttatacatcagttgatgaagccatggagacacgtaaggctttgtataacatacaa
tggcctccaaataatggtggacgcctgctggtggctgagtttgtggatccccaggaagtg
aaaatgcgagcagaagctcctcctcagtcgccagctgcacccacccctcccgctccagct
ccacctgcctcgcagccccagccctcaccccgtcaaccagctcccagacagcagctccca
ccaccgccaactcttccaccaccaccaccacccgtatccaacccagccccagctagagaa
cgcttcactcttccaccccctcccccactcccagaaaaaattgacccaccaatcgtgact
ctggatgacctatttcgcaaaaccaaagcgactcctcgcatctactacttgcctctatca
gaagaacaagttgcggcaaaagttcaatcgcggagtaaaaacaccaagcagtctgcaggt
gttactactacatgtaggaaggaattgttccagccaagcttggggatcttgttcgttgat
ggatttcgatttgggttttccgaaggctgtgcctgcctgaggcttatgttttatttagtg
ttagaaacctcctccccctacaaagctgagagcttctgtggtgtcgtgtgtcttgttttt
ctgttgaaccagaattccaagttttatgaacttcttgtgatgttgttagatcatatttct
aacttttggatgatattttctttcccctttaagtttggtcttcattgtagattctgcaac
aactttgattaa
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