Pistacia vera (pistachio): 116123103
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Entry
116123103 CDS
T07386
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116123103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116123103
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116123103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
TPR_2
TPR_12
TPR_19
ARM_TT21
TPR_MalT
ARM_TT21_N
HEAT_Nup120
SRP_TPR_like
ARM_TT21_5th
TPR_10
TPR_11
Motif
Other DBs
NCBI-GeneID:
116123103
NCBI-ProteinID:
XP_031264752
LinkDB
All DBs
Position
Unknown
AA seq
854 aa
AA seq
DB search
MDSRDSTQSTNANNSTDDDGVLSVTATLAKEAALYFQSRKFDDCIDLLNQLLEKKPDDPK
ILHNIAIAEYFRDGCTDTKKLLDALNNVKKRSEELAHASGEQVENSSNLGNKVILGSKGS
GTSGHQFSAANSGSLVYMDEFDASVAKLNIAVIWFHLHEYAKALSILEPLYQNIEPIDET
TALQICLLLLDVALACHDASRSADVLIYLEKAFGVGCVSQGDTGSMAQQQSANLLAKYSS
VPASSSAADGSNSDLAASVNAAENPLTRTLSEETLEDDTVLALSTLEISGQNLTRPIGLS
SANELSRTLVDKSISTVDLKLKLQLYKVRFLLLTRNLKQAKREVKHAMNIARGRDSSMAL
FLKSQLEYARGNHRKAIKLLLASSNRTEMGISSMFNNNLGCIYYQFIKHHTSSVFFSKAL
SNSAILRKDKPIKLLTFSQDKSLLITYNCGVQYLACGKPILAARCFQKASLVFYKRPLLW
LRLAECCLMALEKGLIVAGRPPSDRSEVRVHVIGKGKWRHLLIEDGISKNGHVDSVEKED
LFFGSDGQPKLSISLARQCLTNALHLLNFSDSSYSKFGLPSNASVEENESGEAASSKNSN
HKNLLGIDSKMPVGLSQVTANGDVKEQKGGTTLEIIQNSVSCYEHICTRENQMIKQTLLA
NLAYVELELENPVKALAAARSLLELPDCSRIYVFLGHVYAAEALCLLNKPKEAAEHFSKY
LSGGNHVDLPFSQDDCEQWRVQKSVDCEELNGGLVSAKNSSPDESQDVIFPKPEEARGTL
YADIAAMYAMQGELDRAHQFVMQALSLLPRSTEATLTAIYVDLMLGKSQEAIARLKHCSH
VRFLPSGLQLSKSC
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggattctcgagattcaacgcaatcaaccaacgctaataactccactgacgacgatggc
gttctctccgtcactgccactttagctaaagaagccgctctctactttcagtctcgcaag
ttcgatgactgcatcgatttacttaatcagctcttagaaaagaaacctgacgatcctaag
attctacataacattgcaattgcggaatacttccgggatggttgtacagatacgaagaag
ttgcttgatgcacttaataatgtgaagaagagaagtgaagaacttgcacatgcctctggg
gaacaggtggagaattctagcaatcttggaaacaaagttattttgggttcaaaaggcagc
ggcacatcaggtcatcaattttctgctgcaaatagtggcagtttagtttacatggatgaa
tttgacgcttctgtggcaaaactaaacattgcggttatctggtttcatcttcatgaatat
gcaaaggctttatcgatactagaacctttatatcaaaatattgaaccgatagacgagacg
acagctcttcaaatttgcctcttgttgcttgatgttgctcttgcatgccatgatgcatca
agatctgctgatgtgttaatttacttggaaaaagcatttggtgttggttgtgtgagtcaa
ggtgacactggaagcatggcacagcaacaatccgctaatctacttgcaaaatattcctct
gttccagccagttcatcagctgcagatggttctaattcggatttagctgctagtgtaaat
gccgctgaaaatcctttaacaagaactttatcagaggagacacttgaggatgatacagtg
ttagcattgtcgacactggagatcagtggtcagaatttaacaaggccgattggtctttca
tctgcgaatgaattatcaaggaccctagttgataagtctatctctactgttgatctgaag
ctcaagttgcaactctataaggttcgctttcttcttctcactaggaacctgaagcaagct
aaacgtgaagtcaagcatgctatgaacattgcacgtgggagggattcatccatggctctc
ttcttgaagtcccagcttgaatatgctcgtgggaaccaccgcaaagctattaaattgttg
ttggcatcaagcaaccgaacagagatgggtatttcaagtatgttcaacaacaatcttggg
tgcatttactaccaattcatcaagcaccatacatcatcagttttcttttccaaggcacta
agtaattctgcaatccttcggaaggacaagccgattaagctgttaactttctctcaggat
aaatctctcctcataacttataactgtggtgtgcaatatctggcttgtgggaaaccaatt
ctagctgctcgctgtttccagaaggcaagtttagttttctacaaacggcctctcttgtgg
cttagacttgcagaatgctgtttaatggctttggaaaagggactaattgtggcaggtcgg
cctccatctgacagatcagaagtcagagttcatgttattgggaaagggaaatggaggcat
cttttaatagaggatggtatttctaaaaatgggcatgtggattctgtagagaaagaggac
ttattttttggcagtgatgggcagcctaagctttctatatctcttgcacggcagtgtctc
actaatgccttgcacttattgaacttttctgactcaagttattcgaagtttggtttgccc
tctaatgcatctgtggaggaaaatgaatctggtgaagcagcatcttcaaagaattcaaac
cacaaaaatttacttggaattgattccaagatgccagtaggcttaagtcaggttactgca
aatggggatgtgaaagagcaaaaaggaggaacaactctggagatcatacagaattctgtg
tcctgttatgagcatatctgtacaagagaaaatcagatgattaagcaaactcttcttgca
aacttggcatatgtagagttggaactggaaaatcctgtgaaggcccttgctgctgcgagg
tctctcttggagcttccagattgttcaagaatttacgtctttttgggtcatgtatatgca
gcagaggcgctttgcttactgaacaagcctaaagaagctgcagagcatttctcaaaatat
ttgtctggaggtaatcatgttgatttaccattcagtcaagatgactgtgaacaatggcga
gtgcagaaaagtgttgattgtgaagagttaaatggaggattggtgtctgctaagaattct
tctcctgatgaatcacaagatgttatcttcccaaagccagaagaggcacgtggaaccctt
tatgcagatattgctgcaatgtatgcaatgcaaggagaactggatcgggcccatcagttt
gtgatgcaagcattgtccctattacccagaagcacagaagccaccctgactgcaatctat
gttgatctcatgcttggcaagtcgcaagaagctattgccaggttaaaacattgtagtcac
gtgaggttcctccccagtggattacagttgagtaagtcttgctga
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