Pistacia vera (pistachio): 116123111
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Entry
116123111 CDS
T07386
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116123111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116123111
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116123111
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116123111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
116123111
NCBI-ProteinID:
XP_031264764
LinkDB
All DBs
Position
Unknown
AA seq
891 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSELESQIDNFEAEMEGLTVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYNTLPLDKVES
LEDLVIIGPPGLVKGAPALSLKTSLAASASQMPATVTSTLQQGTSVPEQVEDTTSQDSNS
ELVARTPPSKSSGISSSTASTPAVGQTTPIAISVPAHNLSSVSNASAVLSSSSSVRGVLD
NTSAISSSPPVNLTNPSKEEDIVNFPGRRSSPSLADVRGIGRGSLSSQPSSSIPLSSATA
VPSNGSLGSVPSVSDMTKRNILGADERLGSSGMAQSLVSPLSNRMMLSQAAKGNDGTGSV
DSNNAGESMSIGSRVFSPSVSMQWRPGSSFQNQNEPGQFRGRTEITPDQREKFLQRLQQV
QQQNHSTLLGIGGGNNKQFPPQQQNPLLQQFSPNSSMSPQPGLGLGVQAPVLNTVTPASL
QQQPNSIHQQSSQQALMPSGQKDADVGHLKVEEQQQQQNLPEESTVESAPSPGLGKNLMN
EDDLKVSYAMDSPAGVSGSLTEPAQVVREIDLSPGQPLQSSQPSGGLGVIGRRSVSDLGA
IGDSLSGSTVNSGAMHDQMYNLKMLESAFYKLPQPKDSERARSYIPRHPAVTPHYYPQVQ
APIVNNPAFWERMSLDSFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR
HEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcgcaagttacaaggcgagatcgatcgagtgctcaagaaggttcaagaa
ggtgtcgatgtcttcgatagtatctggaacaaggtatatgatacagacaatgcaaaccag
aaggagaagtttgaggctgacttgaagaaggagatcaagaagctgcagaggtaccgtgat
cagataaagacatggattcagtctagcgagatcaaggataagaaagtcagtgcctcttat
gagcaggctctggtggatgctcgtaagcttattgagcgtgaaatggaaagatttaagata
tgtgaaaaggaaactaagacaaaagcattttctaaagaaggcttgggacagcaaccgaaa
actgatccaaaggagaaggccaaggcagagacaagggattggttgaataatgtggtttcg
gagttggaatcccagatcgataattttgaagcagaaatggaagggctaactgtgaagaaa
ggaaagacaaggccacccagattgacacatttagagacttctattacacggcacaaagct
catattatgaagttagaattgatcttgaggctactagataatgatgaactgagtccagag
caggtcaatgacgttaaagacttcttggatgactatgtggaacgtaatcaggaggatttt
gaagaattcagcgatgttgatgagctttacaacacattaccactagacaaggtggaatcc
cttgaagatttggttataattggtcctccaggtcttgttaagggtgctccagctcttagc
ttgaagacttccttggctgcatcagcatctcaaatgcctgctactgtcacttccacgctt
cagcagggtacttctgtcccggaacaagttgaagatacaacttcccaggatagtaattca
gaattagttgcaagaacaccgccgtcaaaaagtagtggaattagttcttcaactgcatca
actccagctgttggtcaaacaactcccattgccatcagtgtcccagctcataacttgtca
agtgtgtcaaatgcttcagctgtactttcaagttcaagttctgttcgaggtgtattggat
aacacaagtgccatcagttcttcacctcctgtaaatctgacaaatccttctaaggaagaa
gatattgtgaacttcccaggccgtagatcatctccatcccttgcagatgtaaggggcatt
ggaagaggtagcctctccagccaaccttcatctagcatacctcttagttctgccactgca
gttcctagcaatggaagccttggctcagttccttcagtctcggatatgactaagagaaat
attttgggagctgatgaaagacttggcagtagtggcatggcacaatctctggtttcccca
cttagtaaccgaatgatgttgtctcaggctgccaagggtaatgatggaactggatcagtt
gattccaataatgctggagagagtatgtcaataggtagcagagttttctctccttcagta
agcatgcaatggaggcctggaagttcctttcaaaaccagaatgaaccggggcagtttcgt
ggaagaactgaaattacacctgatcagagagagaagttcttgcaacggctccaacaagtg
cagcaacaaaatcacagtacccttcttggcattggtggtggaaataataagcagtttcct
ccccaacaacaaaacccactgttgcagcagttttctccaaactcatccatgtctcctcaa
cctggtctgggacttggggttcaggcaccagtacttaatacggttacacctgccagcttg
caacagcagccaaattctatccatcaacaatccagtcaacaggcattgatgcctagtggt
cagaaagatgcagatgttggtcacttgaaagttgaggagcagcagcaacaacagaattta
cccgaggaatcaactgttgaatctgctcctagtcctggacttggcaagaatcttatgaat
gaggatgatctcaaagtttcatatgcaatggattctcctgcaggagtgtctggctctttg
acagagcctgctcaagtagttagagagattgatttatctcctgggcaacccttacagtcc
agccagccttctggtggcctcggtgttattggtcggagaagtgtttctgatcttggtgct
attggcgatagtttgagtggttcaactgtgaattctggagcaatgcacgatcagatgtat
aatttgaagatgcttgagtctgcattttataaacttccacaaccaaaggactcagagcgt
gccaggagctacattcctaggcaccctgcagtgacgcctcattactatcctcaagttcag
gcacctattgtgaataatccagccttttgggagcgaatgtcactggatagttttggtact
gatacactgttctttgcattctactatcagcagaacacataccaacaatatttggctgca
aaagagctaaaaaagcaatcttggaggtaccacagaaaatacaatacatggttccaacgg
catgaggagccaaaagttgctactgatgaatatgaacaagggacttatgtgtactttgat
tttcatattgccaatgatgatctccaacatggatggtgtcaaagaattaagacggagttc
acttttgagtacaactatcttgaagatgagctatag
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