Pistacia vera (pistachio): 116123158
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Entry
116123158 CDS
T07386
Name
(RefSeq) exosome complex component RRP42-like isoform X1
KO
K12589
exosome complex component RRP42
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116123158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116123158
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116123158
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
116123158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116123158
NCBI-ProteinID:
XP_031264826
LinkDB
All DBs
Position
Unknown
AA seq
292 aa
AA seq
DB search
MSVEGMVGLSEGEKEFIKGGIAQDLRSDGRKRHTYRPIYVETGVIPQANGSARVRLGATD
VIASVKGELGKPSSLQPDKGKVAIFVDCSPTAAPMFEGRGGEDLSAELSGALQRCLLGSK
SGAGAGIDLSSLVVVEGKVCWDLYIDGLVVSADGNVLDALGAAIKAALSNTGIPRVNVAA
GAANDDQPEVDISDEEFLQFDTSGVPVIVTLTKVGKHYIVDATSEEESQMSSAVSISINR
QGHICGMTKRGGLGLDPSVILDMVSVANFVSRQLFDKLDSEISAAEADEDES
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaaggaatggtgggtctttctgagggagaaaaggaatttattaaaggtgga
attgcacaagacctccgctccgatggtcgcaagagacatacttacagacccatttatgtt
gaaaccggtgtcattcctcaggcaaatggttcggcaagagtaaggttaggggcgacggat
gttattgctagtgtcaagggtgaacttggaaagccaagctcgttgcaacctgataaaggg
aaggttgctatatttgttgattgcagcccaactgctgccccaatgtttgagggcagagga
ggtgaagatctgtcagcagaactctccggagctcttcagcgttgtctcttgggtagtaaa
agtggagcaggagctggaattgatctatcatctctagtagttgtggaaggaaaagtttgt
tgggatctttatattgatggtctagttgttagtgcagatggaaatgttctggatgctctt
ggcgctgccattaaggctgctttgagcaatactggcatcccaagagtcaatgttgcagcc
ggtgcagcaaatgatgatcaaccagaggttgacataagtgatgaagaatttctgcagttt
gacacgtctggagttcctgtcatagttacattaacaaaggtaggaaaacattatatagta
gatgctacatcagaagaggaatcgcaaatgagctcggcagtttctatttctatcaatagg
caagggcacatttgtggtatgaccaaacgaggaggtttgggcttagatccaagtgtcatt
cttgacatggtatctgttgctaattttgtaagcaggcagctatttgacaaattggactct
gagatatctgctgctgaagctgatgaagatgaatcatga
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