Pistacia vera (pistachio): 116123974
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Entry
116123974 CDS
T07386
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116123974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116123974
03012 Translation factors [BR:
pvy03012
]
116123974
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116123974
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116123974
Translation factors [BR:
pvy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116123974
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NPHP3_N
AAA_23
T2SSE
NACHT
AAA_14
ABC_tran
Dicer_dimer
ATPase_2
PhoH
Motif
Other DBs
NCBI-GeneID:
116123974
NCBI-ProteinID:
XP_031265551
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MDKILRRRSLQLRDQQQAWQESPDGRKMLEFRRSLPAYKEKDNLLTAISQNQVIIISGQT
GCGKTTQIPQFILESEIESVQGAVCSVICTQPRRISAISVSERVAWERGEKLGESVGYKV
RLEGMKGKDTHLLFCTTGILLRRLLVDKNLKGVTHVIVDEIHERGMNEDFLLIVLKDILP
RRPELKLILMSATLDAELFSSYFGGAMIIHIPGFTYPVRTHFLENILEMTGYRLTPFNQI
DDYGQEKTWKMSKQAPRKRKSQIASAVEDALRAANFKEYSCQTQESLSCWNPDCIGFNLI
EYLLSHICEQERPGAVLVFMTGWDDINSLKDKLQAHPILGDSSRVLLLTCHGSMASSEQS
LIFDEPEGGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISKV
SAQQRRGRAGRVQPGECYHLYPRCIYDAFAEYQLPEILRTPLQSLCLQIKSLNLGSISEF
LSRALQSPELLAVQNAIEYLKIIGALDQNEDLTALGRYLTVLPMEPKLGKMLILGAIFKC
LEPVLTIVAGLSVRDPFLAPVDKRDLAEAAKSQFSHDHSDHLALVRAYEGWKAAERDLAG
YDYCWKNFLSFQSMKAIDSLRDEFFSLLKDTGLADCNTTMCNAWSYDDHLIRAVICYGLY
PGICSVVNNVKSFSLKTMEDGQVLLYSNSINARESEIPYPWLVFNEKIKVNSVFLRDSTA
VCDSVLLLFGGSIFQGDADGQLKMMGGYLEFFMEPAVSDIYQCLRRELDELIQKKLLNPR
MEMHMYHDLLSAVRLLVSNDHCEGRFVFGRQVLMSPKPSPVATQPTLIPRTESGPGGDNS
KSQLQTLLTRAGYAAPTYKTRQLKNNQFRSTVEFNGIQIIGQPCNNKKSAEKEAAAEALQ
WLMGGTHTGVEYINQMSLLLKKSKKDHY
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattttgcggcgacgaagtttacaactgcgtgatcagcagcaagcttggcag
gaatctccagatggtagaaaaatgcttgaattccgcagaagtcttcctgcttataaggag
aaggacaacctattgacagccatttcacaaaatcaggtcataattatatcaggtcaaact
ggctgtggcaagaccacacaaattcctcaattcatattagagtctgaaatagaatctgtt
cagggtgctgtttgtagtgttatatgtacacaaccaagaagaatatctgcgatttctgtt
tctgagagagttgcttgggagaggggggagaaactgggtgaatctgttgggtataaagtt
cggctggagggcatgaaagggaaggatacccatcttctcttctgcaccacaggcatcttg
ttgagaagattactggttgataaaaatttgaaaggtgtaactcatgttattgttgatgag
attcatgagcgtggaatgaatgaggattttctgcttattgtccttaaagatatcttgcct
cgtcggccagaattgaagctgattctgatgagtgcaaccctagatgcagagcttttttca
tcctactttggtggagctatgataattcacattccgggtttcacatacccagttagaact
cattttctggaaaatattttggaaatgacgggttacagattgaccccatttaatcaaatt
gatgattatggtcaagaaaaaacgtggaaaatgagcaaacaagcaccaagaaagaggaag
agccaaattgcctctgctgttgaggatgcacttagagcggccaatttcaaggagtatagc
tgccagactcaggagtcattgtcatgttggaatcctgattgtattggttttaatctcatt
gaatacctcttatcccatatttgtgagcaagaaagacctggtgctgttctagtttttatg
actgggtgggatgacataaattctcttaaggataaactacaagctcatcctatattaggt
gattcaagccgagttttgttacttacctgccatggttccatggctagttcagagcagagt
ttaatatttgacgagcctgaaggtggagtgaggaaaatagtgcttgccactaacatagct
gagacaagtatcaccattaatgatgttgtttttgtcattgactgcgggaaggcaaaggag
acatcatacgatgcactgaataacacttcttgtctgcttccttcttggatttccaaggtt
tctgctcaacaaagaagaggaagggctggccgtgttcaacctggagaatgttaccatctt
tatcctaggtgtatatatgatgcttttgcagaatatcagctaccggaaattttaaggacg
cctttgcaatctctgtgcctgcaaattaaaagtttaaatcttgggagtatttctgagttc
ctatccagggctctgcagtcacctgagttactagctgtccaaaatgctattgagtatcta
aaaatcattggggccttggaccagaatgaagacttgactgccttaggtcgatatttgact
gtgcttccaatggagcctaaacttggaaagatgctcatattaggtgctatctttaaatgt
ctggaaccagttttaacaattgttgctggccttagtgtcagagatcctttcttagcacca
gtggacaaaagggatcttgctgaggctgcaaaatctcagttttcccatgatcatagtgac
caccttgcacttgttcgggcctatgagggatggaaagctgctgaaagagaccttgctgga
tatgactactgttggaaaaactttctctcatttcaatcaatgaaagctatagattctctt
cgagatgagtttttctctttgctcaaggatactggtctcgctgattgcaacacaaccatg
tgcaatgcatggagctatgatgatcatctcatccgagcagttatttgttatggtctttat
cctggaatttgctctgttgtgaataatgtgaagtccttttcactgaaaaccatggaagat
ggccaggtgcttctatactctaattccatcaatgctcgggaatctgaaataccatacccc
tggctagttttcaacgagaagataaaagtgaactctgtttttcttagggattcaacagct
gtctgtgattcagtgctgcttctgtttggtggtagcatctttcaaggagatgctgatgga
caattgaaaatgatgggaggatatttggaattcttcatggaacctgctgtttctgatata
tatcaatgtttaaggagagaacttgatgaactgattcaaaaaaagttactcaatcccaga
atggaaatgcacatgtatcatgacctcctatctgcagttcgattgcttgtttcaaatgat
cattgtgagggaaggtttgtatttggccgccaggtgcttatgtcgcccaagccctcacct
gtggcaacacagccaactttgattccaaggacagagagtggacctgggggtgataattct
aagagtcagctccaaacattgctcactagggcaggatatgccgcccccacctacaaaacg
agacaattgaagaacaaccaattccgatctacagtggaatttaatggaattcaaattata
ggtcagccttgcaacaataagaagagtgcagaaaaagaggccgcagccgaggcactgcag
tggctaatgggaggaacccatactggcgttgaatacataaatcaaatgtcactgttgctg
aagaaaagcaagaaggatcactactga
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