Pistacia vera (pistachio): 116125153
Help
Entry
116125153 CDS
T07386
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03030
DNA replication
pvy03420
Nucleotide excision repair
pvy03430
Mismatch repair
pvy03440
Homologous recombination
pvy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116125153
03420 Nucleotide excision repair
116125153
03430 Mismatch repair
116125153
03440 Homologous recombination
116125153
03460 Fanconi anemia pathway
116125153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvy03000
]
116125153
03032 DNA replication proteins [BR:
pvy03032
]
116125153
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116125153
Transcription factors [BR:
pvy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116125153
DNA replication proteins [BR:
pvy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116125153
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116125153
MMR (mismatch excision repair)
116125153
DSBR (double strand breaks repair)
HR (homologous recombination)
116125153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF936
RADX
POT1
DUF223
CDC24_OB3
zf-CCHC_3
BRCA-2_OB1
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
116125153
NCBI-ProteinID:
XP_031266736
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MAINLTEGAIELICKGDVTTDNHLIPVLQVMDLKLVVSKQQQQQQQQRFRMVLSDGSLSQ
QGMLATQRNELVHSGQLQIGSVVRLTKFTCNVIQNRMIVIVMDLEVIMQNCKPIGKPVPA
QRPSAPAQVSNDQLRAVTGNPQHYGGSSLAGGSVDKSNVTGTSPQHANRSMNHLSGTSYS
SNSDPASCVTTNETPCYSKPEPGARFSGVGAPVDKPNVSGTSPQHANMRMNQLPGNSYSS
NSDPARYVTTNETSSYSKSESGARFSGGSGSFNNQNMSFGDPRLELSRSYQSNYARTPQP
AYMQPPAMYGNRGQVAKSETLPRIIPIGALNPYQGKWTIKARVTSKGELRHYNNQRGDGK
VFHFDLLDSDGGEIRATCFNAVVDQFYHQVEAGKVYLISRGTLKPAQKTFNHLHNDLEIF
LDTTSMVQLCVEDDNSIPQQQFHFCSISDIEAMENNSVVDVIGVVSFISPAASIMRKNGT
ETHKRTLHLKDMSGRSVELTLWGTFCNDDGQRLQEMCDSGIFPVLAVKSARVNDFNGKAV
GTILSSQLFMEPDFPEAHKLREWFDKEGKNIQSVSISRETLSVVRSDIRKTISQIKDEGL
GTKEKPDWITVNATVVYIKFDNFCYTACPIMIVDRPCNKKVTNNGDGRWHCDRCDQSVAE
CDYRYIIQFQIQDHTGLTWVNAFQECGEEILGISAKDLYYLKYVDQNEEKFSETLRNATF
SKYIFKLKVKEETFGDEQRVKSTVVKVEKYNHSSDTRFLLDMMDKLKSGDLSSYTSKAES
SVPNSGMSNRGAGSIGNRQPAPAFANYVGTNSNASRDFGLMANQMGQYGNQYSGSRLAVA
GTPMQECCSSCGAAGHSSANCPSIMSGPGQSMAGGYSNRVSPGVGGGVGGGASGECYKCH
KFGHWAKDCPGRNTAPPAYGSSGIGISPGRYGNAPRQQVGGF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcgataaatttgacggagggtgcgatagagttgatatgcaagggcgatgttacgacg
gacaaccacttgatacccgtgcttcaagtgatggatttaaagctcgttgtttctaagcaa
cagcagcaacagcaacaacagagattcagaatggtgctatcggacggatcgctgagtcag
caaggcatgctcgccacccagagaaatgagttagtccattccgggcaattgcagattggc
tccgttgttaggttaaccaagttcacctgtaacgttatccaaaaccgcatgattgttatt
gttatggatttggaggtgataatgcaaaattgtaagccaattggaaaacctgtacctgcg
caaagaccttctgcacctgcgcaagtgtccaatgatcaattgagggcagttaccgggaat
cctcaacattatggtggaagctcgcttgctggtgggtcagttgataaatcaaatgtgact
ggtacatctccacaacatgctaacaggagtatgaatcatttatcgggtacttcatattcc
agcaattctgatcctgcaagttgtgttacaacaaatgaaacaccatgttattctaaacca
gagcctggtgctagattttctggtgttggtgcgccagttgataaaccaaatgtaagtggt
acatctccccaacatgctaacatgagaatgaatcaattaccgggtaattcatattccagc
aattctgatccagcaagatatgttacaacaaatgaaacatccagttactctaaatcagag
tctggtgctagattttctggtggatcaggatcatttaacaatcagaacatgagttttggt
gaccctaggctggaactttcccggtcttatcaaagcaattatgctcgtacgcctcaacca
gcctatatgcagccacctgctatgtatgggaacagaggacaagtggctaagagtgaaaca
cttcccaggataattcccattggtgctcttaatccctaccagggcaagtggacaatcaag
gctcgtgtaacatccaagggagaacttaggcactataacaatcaacgtggtgatggtaaa
gttttccattttgatcttcttgactctgatggtggcgaaatcagggcaacctgctttaat
gcagtggtggaccaattttaccaccaagttgaagcaggtaaagtttatttgatttctagg
ggaactttaaaacctgctcaaaagaccttcaatcaccttcataatgatcttgaaattttt
cttgatactacgtcaatggtacagctgtgcgtggaggatgacaattcaattccacaacag
cagtttcatttctgttccataagtgatattgaagccatggagaacaactctgttgtggat
gttattggtgtggtctcatttattagtccagctgcttcaataatgagaaaaaatggtact
gaaactcacaagagaaccctccatttgaaagatatgtccgggcgaagtgttgaattaacc
ctatggggaaccttctgtaatgatgacggacaaagactgcaagaaatgtgtgattctggg
atctttccagttcttgctgtgaaatcagccagggtcaatgattttaatgggaaagcagtg
gggactattttgtcaagtcagctgtttatggaacctgattttcccgaggctcacaagtta
agagaatggtttgacaaggaaggaaagaatatccagtcagtctccatttccagggaaaca
ttgagtgtggttaggtcggatatccgaaagactatatctcaaattaaagatgagggttta
gggacaaaggagaagccagattggatcactgtcaatgcaacagttgtatacataaaattt
gacaatttttgttacacagcttgtcctatcatgattgtggatcgaccatgcaacaaaaag
gttacaaataacggagatgggaggtggcattgtgataggtgtgatcagtctgttgctgaa
tgtgactataggtatataatccagttccagatacaggatcatactggcttaacatgggta
aatgcatttcaggagtgtggtgaggagatcctgggcatttctgcaaaagatttgtactac
ttgaaatatgttgatcaaaatgaagagaaattttcagaaaccttacggaatgctaccttt
tcaaaatatatattcaagttgaaagtaaaggaggaaacattcggtgatgaacaacgtgta
aagtcaacagtagtcaaggtggaaaagtataatcattcatctgataccaggtttcttttg
gatatgatggataagcttaaatcaggagatttaagttcttatacctcaaaggcagaaagt
tcagttcctaattctggaatgagtaatagaggagctgggagtatcggaaacagacaacct
gcaccagcatttgcaaactatgtggggactaacagcaatgctagtagagatttcgggtta
atggccaatcaaatggggcagtatggaaaccagtacagtggttcaaggcttgctgttgcc
ggcactcccatgcaggaatgctgtagcagttgcggggctgctggtcatagctctgcaaat
tgcccgagcattatgagtgggcctggacagtccatggcaggaggctattccaacagagta
tcccctggagtaggcggtggagtaggcggtggtgcatctggtgagtgttataaatgccac
aaattcggacattgggcaaaagactgtcctggacggaatacagctcctccagcttatgga
agcagcggcattggcatttcccctgggagatatgggaatgccccaaggcaacaagttggt
ggcttttga
DBGET
integrated database retrieval system
