Pistacia vera (pistachio): 116125261
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Entry
116125261 CDS
T07386
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116125261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116125261
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116125261
mRNA degradation factors
5'-3' decay
Decapping complex
116125261
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
Motif
Other DBs
NCBI-GeneID:
116125261
NCBI-ProteinID:
XP_031266845
LinkDB
All DBs
Position
Unknown
AA seq
1408 aa
AA seq
DB search
MASNPQGVASGGGGGGGFDMNKLLKPTSNPMNLIPNSTNLTTSPSFPTPAPSSPSPYLTP
SSSYPPPTGPYPPYHYYPYPPPPPPHQHFALQQNVNNNNRPQTQISYTPQPLPQQPNPNS
SASSPPPPSPTTASTNNLLMAFFGNQNQNQSQTQNQNHNLSPAPSDSATVSVPSAPPVRL
RSSKLPKGRHLIGSHVVYDIDVRLDGEVQPQLEVTPITKYASDPGLVLGRQIAVNRNYIC
YGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD
EEEKPQILGKIVVAIQILADGESRHPRVCWHPHKQEILMVAIGNRILRIDSNRVGKGERF
SAEEPLKCPIDELINGVHFVGKHDGEVTELSMCQWLTTRLASASVDGTVKIWDDRKGTPL
AVLRPYDGQPVNSVTFLIGPHPQHIVLITGGPLNREVKIWASAEEEGWLLPSDVESWKCT
QTLDLKSSAEPRLEDAFFNQVVALNRAGLFLLANAKKNAIYAVHIDYGANPASTRMVYIA
EFTVTMPILSLTGTSDGSTDGEHIVQVYCVQTQAIQQYALDLSQCLPPPLENAELEKTDS
SAARDAANSDGSAILESSHGSKSADLPMATTNLIPPILSSSSESVPVASRSESFPSSEVA
GLPENFSSAETKPSALPSHSNAENIRTASPPPPLSPRLSRKSSGLRSPSNSYEPCPPPSE
LGVDQSVTVNSVDHRANAAKEKVGDVPSSGDNMWKGDRNVAQNDISMVPDPPVVFKHPTH
LVTPSEILSTVASSSENSQFGQRMNAGESKVQDVVVNNDTEGVEVEVKVVGETGNVQHNE
YNSPRESHITVNEKKEKSFYSQASDLSIQMARDCCVGTYNVEGIRQVNDGSVTEAPDRPS
NNREVEEQDVPKDAPAKVGASEPPMVIPQSPVPATKGKKQKGKNSQISGASSPSPSPHNS
TDSSNEPACTSASPSNDATLSQLSTMQDMLDQLMNMQKEMQKQMNAVVSAPVTKEGKRLE
ASLGRSIEKVVKANTDALWARFQEENAKHEKLERDRLQQITNLITNSINKDLPAMFEKTL
KKEIAAVGPAVARAISPTLEKSISSAITESFQKGVGEKVVSQLEKSVGSKLETTVVRQIQ
AQFQTSGKQALQDALRSSLESSIIPAFEMSCKAMFEQIDSTFQKGLVKHTNTVQQQFESA
HSPLAIALRDAINSATSVTQTLSGELADGQRKLLALAAAGANSKAVNPLVTQSSNGPLAG
LHEMVEAPLDPTKELSRLIAERKFEEAFTAALHRSDVSIVSWLCSQVDLPGILSTLPLPL
SQGVLLALLQQLACDISKETPRKLAWMTDVAVAIIPTDPMIAMHVRPIFEQVYQILGHQR
NLPTTSASEANSIRLLMHVINSVLMSCK
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaatccgcaaggtgtcgctagcggtggtggcggtggcggtggatttgacatg
aacaaactattgaagcccacatccaatcctatgaatttgattccaaactctacaaatcta
acaacttctccttcatttccaacgcctgctccttcttcaccctctccgtatttaacacct
tcttcttcttatccgcctccaactggtccctatcctccttaccactattacccctatccc
cctccacctcctccacatcagcactttgctcttcaacaaaacgttaacaataacaataga
cctcaaactcaaatctcttatacccctcaacctctccctcaacaacctaaccctaattct
tctgcttcatctcctcctcctccttctcctactactgcttctactaacaatcttctcatg
gccttcttcggcaatcagaatcagaatcagagtcaaactcagaatcagaaccacaacttg
tcacctgctccctccgattcagcaactgtttctgttccttctgcgccgcctgttagattg
cggagcagtaagcttcccaaaggaaggcatttgattgggagtcatgtggtttatgacatt
gatgttagattagatggtgaagttcagcctcagcttgaagttactccaattactaagtat
gcctccgatcctggtcttgttcttggtcgtcagattgctgttaataggaattacatttgt
tatggtctcaagcttggtaatattcggatacttaatattattactgctttgagatctttg
cttcgtggtcacactcagagagtaacagatatggctttcttcgctgaagatgttcatctt
ttggctagtgcaagtgttgatggacgctttttcatatggaacattactgaaggcccggat
gaggaggaaaaacctcaaatcttgggtaaaattgtagttgccattcagatactggcagat
ggggaatcacgccatccacgagtttgttggcatcctcacaaacaagaaattttgatggtt
gcaattggaaatcgaatcctgaggattgatagcaatagagttggaaaaggggaacggttt
tctgctgaggaaccgcttaagtgtcctattgatgagttgattaatggggttcattttgtt
ggtaagcatgatggtgaagttacggagctgtcaatgtgccaatggctgaccacccgctta
gcttcagcatcagtcgatggcacggtaaagatttgggatgaccggaagggaacaccactt
gccgtgttgaggccatatgatggtcaacctgttaattctgtgacattcctgattggtcct
catccgcagcacattgtgctgatcacagggggtcctttgaaccgggaagtgaagatatgg
gcctctgcagaggaggagggctggttgttgcccagtgatgttgaatcatggaagtgtact
cagactttggacttaaagagttctgctgaacccaggcttgaggatgcattctttaaccaa
gttgtagcactgaaccgtgcaggcttgtttttattggcaaatgccaagaagaatgctatt
tatgctgtgcacatagactatggggccaatccagcctcaacccgcatggtttacattgct
gaatttactgttacaatgcctattttgagtcttactggaaccagtgatggttctaccgat
ggagaacatattgttcaggtttattgtgtgcaaacacaggctattcagcagtatgcttta
gacttgtcccagtgcctgccaccacctttggagaatgcagagctggagaaaacagattcc
agtgctgcccgagatgctgctaattctgatggttctgctattctggaatcatctcatgga
agtaaatctgctgacttgcctatggctacgacgaatttgataccacctatactttcaagc
agctccgagagtgtacctgtagctagccgttctgaaagttttccttcttcagaggttgct
ggtttgcctgaaaatttttcaagtgcagagacaaagccaagtgctttgccatctcatagt
aatgctgaaaatatacgcactgcatctcctccgccacctttgagtccaaggttatctcgt
aaatcatctgggttaagaagtccatcaaatagctatgagccttgtcccccaccaagtgag
cttggtgttgaccagtccgttactgttaattcagttgaccatagagcaaatgctgccaaa
gaaaaagtgggtgatgtgccttcatcgggagacaatatgtggaagggtgatagaaatgtt
gcacaaaatgatatttctatggttccagatcctcctgttgtttttaagcacccaacccat
ctggtaactccatcggagattttatcaaccgttgcctcgtcctctgaaaattctcagttt
ggtcagcggatgaatgctggagagtcaaaggttcaagatgttgttgtcaacaatgatact
gagggtgttgaggtggaagttaaagttgttggtgagacaggaaatgttcaacataatgag
tataactctcctagggaatcacatattactgttaatgagaagaaagagaaatccttctat
tcccaggcctcggatcttagcattcagatggctagagattgttgtgtcggaacatataat
gtggagggaattcgccaggttaatgatggaagtgttactgaagcaccagatagaccttct
aataacagagaggttgaagaacaagatgtgccaaaagatgcacctgcaaaggttggtgca
tcggagcctcccatggtgattccacaatccccagtcccagctaccaaagggaaaaaacaa
aagggaaagaattctcaaatatctggtgcatcttcaccttcccctagcccgcacaactcc
acagattcttctaatgagccagcttgcacttctgcttctccatccaatgatgctactttg
tctcagctatcaactatgcaagatatgcttgatcagttgatgaatatgcaaaaagaaatg
cagaagcagatgaacgcagtggtttctgccccagttaccaaagaaggtaaacgacttgag
gcgtccttgggccggagcattgaaaaagtcgttaaggctaacacagatgctttgtgggct
cgtttccaagaagagaatgctaaacatgagaagttagagcgagaccgtctgcaacagata
acaaatttgataaccaattctataaacaaggacttgccagccatgtttgagaaaacttta
aagaaagaaatagctgcagttgggccagctgttgctcgtgcaatctctccgactctggag
aaaagcatatcatcagctatcacagagtcattccagaagggagtgggtgaaaaggtagtt
agtcaacttgagaaatcagttggttcaaaactggaaactactgtggtcaggcaaattcaa
gcacagtttcaaacttctggcaagcaagctcttcaggatgcattacggtctagtttggaa
tcttcaattattcccgcatttgagatgtcatgcaaagcgatgttcgagcaaattgattcc
acattccagaaagggcttgtcaaacatacgaatactgttcaacagcagtttgaaagtgca
cattctccccttgccattgctttaagggatgcaattaattcggcaacatcagttactcag
actttaagtggagaattggctgatgggcagcgtaagctcttagctctggcagctgcaggt
gccaactccaaagcagtgaatcccttggtaactcagtcaagtaatggaccattggctggt
cttcatgagatggttgaggcacctttggatccaacaaaagaactatctaggttgatagct
gagcgcaaatttgaggaggcatttacagcagccttgcacagaagtgatgtatcaattgtt
tcttggttatgttctcaggttgatttaccggggattttgtcaacattaccgctccccctc
agccaaggagttctacttgcacttctccagcaattggcttgtgatatcagcaaagaaaca
ccaagaaagttggcatggatgacagatgtggcagttgccataatcccaacagatcccatg
attgcaatgcatgtgcgacctatctttgagcaggtttatcagatactaggtcatcaacgg
aacctacccactacctctgcctcagaagcaaacagcatccgtcttcttatgcatgtcata
aattctgttttgatgagctgtaaatga
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integrated database retrieval system
