KEGG   Pistacia vera (pistachio): 116125648
Entry
116125648         CDS       T07386                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pvy  Pistacia vera (pistachio)
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pvy03009]
    116125648
Ribosome biogenesis [BR:pvy03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    116125648
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_IP5PC_F ANAPC4_WD40 Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_WDR75_2nd Beta-prop_SCAP WDR54 Beta-prop_LRRK2 Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_BBS7 Beta-prop_DCAF12 PEP5_VPS11_N VPS8_N Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 116125648
NCBI-ProteinID: XP_031267227
LinkDB
Position
Unknown
AA seq 447 aa
MELVIASSSIADAGIGCWDLQSGAEQLRYKSCASPSHGLACVGDRFLASSQLREPSSSSG
SVLYWSWSKPQVEVKSFPAEHIKPIAANSEGTYIVGGGQSGDIYLWEVMSGRLLKKWHAH
YRAVTCLVFSEDESLLISGSEDGCVRVWSLLMIFDDYESQQATHLYLHSFTEHTLRVTDV
VTGCGGCNAIIVSASEDRTCKVWSLSTGRLLRSIVFPSVIDAVVLDPAEHVFYAGSRDGN
IYVAALNAESSSSSSYGMHIISSLSHRSRAVTCLAYSTEGDLLLSGSEDGMVRVWDPKTH
NIVRMFKHAKGPVNNILVVRRPHYLSLGTFSNSNASSRRHGFLLPPPLDKYVNLTDEGLN
NKTVIRLPTARNIPQDALYCSSRIIDEHIEDFQRQGSSAAAEMEVERLKHECGRSMQIVQ
QWKKMYDNLHEFCINELLDGDQVGCTK
NT seq 1344 nt   +upstreamnt  +downstreamnt
atggagctagtaatcgcgtcatcatcaattgccgacgccggcatcggttgctgggatttg
caatcaggtgctgagcagctccgctacaaatcatgcgcctcaccttcacatggactcgct
tgtgtgggagaccgtttcctcgcctcctctcaactccgtgaaccttcatcttcttcaggc
tccgtcctctattggtcctggtccaagcctcaagtagaagtgaaaagctttccggctgag
catattaagccgattgcggctaatagcgaaggcacatatatcgttggtggaggtcaatct
ggagatatatatttatgggaggttatgagtggtagattgttaaagaagtggcatgcgcat
tacagggcggttacatgcttggttttctcagaggatgagtctcttctgatttctgggtct
gaggatggatgtgttagagtttggtctcttttaatgatatttgatgattatgaaagtcaa
caggcaacccatctctatctgcatagttttaccgagcacactctgcgtgttacagatgtt
gttactggttgtgggggatgcaatgcaattatagtgtcagcttctgaggatcgaacgtgc
aaggtctggagtttatctacaggaagattattgagaagtatcgtattcccttcagtaatt
gatgcggttgtactggaccctgctgaacatgtcttctatgctggcagtagagatggcaat
atttatgttgctgcacttaatgctgaaagttcctctagcagcagttatggaatgcatatc
attagttcattgtcccaccgcagcagagctgtcacttgtttggcatacagtacagaagga
gatttgttgctttctggatcggaggatggcatggttcgagtttgggacccaaagacccat
aacattgttcgcatgttcaaacatgcaaaaggtcccgtgaacaatattcttgttgttaga
cgacctcactatcttagtttgggaacattctcaaattcaaatgcttcctcaagaaggcat
gggtttttattaccgcctccactggataaatatgtcaatctgactgatgaaggcttgaac
aataagactgtcatccgtctccccactgctcgcaatattcctcaagatgctttatactgc
agttctcgaataattgatgagcatattgaggacttccagagacaaggttcttctgccgca
gcagaaatggaggtggagaggctaaagcatgaatgtggaaggtccatgcaaatagttcag
cagtggaagaaaatgtatgacaacttgcatgaattctgtattaatgaacttttggatgga
gatcaagtgggatgcaccaaatga

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