Pistacia vera (pistachio): 116126359
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Entry
116126359 CDS
T07386
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116126359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116126359
Enzymes [BR:
pvy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116126359
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116126359
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
Motif
Other DBs
NCBI-GeneID:
116126359
NCBI-ProteinID:
XP_031267915
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MVPNARLLSQKRFFSTKTLHRNHLQWPIKQVTKSNFNDSLPEIKHHIANSHFIALSLQNT
GSFSTPWHRLSAFDTPHTAYSKAKFAAERFQILQFAVCPFKIEARKVVAFPYNFHLFPRD
ELKLGMPSYSFTCQTSSLNSMAKEGFDFNACIYDGISYLSRAQESSAKVRMGNPIIVDHE
KSSFAPIPVPTVADTVFVERIRSRVKHWKNACTDSSAKTDAAEALVISLRKLVLGSEQHG
SRPCMTIDVCSERQVQLVLKMLEEFSDLVPLLIPAKSGGTQAVRVVLTSSEEDRDLLKRE
LQDLEVEQDKRVRGFREVIDLICASQKPVVSHNSLNDFAFIHSKFLAPLPPNVVEFMSSL
RMAFPQVLDVNHLMTDIGPARTSMSANMSYLKNRFFAPIDMEIPHKATENESNIHGHNVV
KICHLFGKLCSVLNLTPTSSRSSNHHLASAFDGYANIFNLSSDSCQEPTDEDIRVWTNNT
RKVRCEDVAFLWGFRKRMSAGTLKTLLRGSNEVFAKEFDVRLVDRSCAMVVFWQPSLRET
FVDIMNSEKISGALKEMVSEGLKATGYETYKRVCSSGLWELELADALDKALALPDSNLED
DYETNTSEIYWSNDLKINLDDL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccaacgctcggcttctctcacaaaaacgcttcttctccaccaagaccctccac
agaaaccaccttcaatggcccataaaacaagtcacgaagtcaaacttcaacgactctctt
ccagaaatcaaacatcacattgccaactcccatttcatagccctctccttacagaacacc
ggctccttttccacgccgtggcaccgcctctctgccttcgacacgccccacacggcttac
tccaaagccaagttcgccgccgaacgctttcaaatacttcagttcgccgtctgccccttc
aagattgaagctcgcaaagtcgttgcctttccgtacaactttcatttgttccccagagat
gaactcaagctcggaatgccttcttatagtttcacatgtcaaacatcgtctctaaattcc
atggcgaaagagggttttgattttaatgcttgtatatatgatgggatatcatacttatca
agagcacaagagtcttcagcgaaagttcggatggggaatcctataattgttgatcatgag
aaatcttcttttgctcctatacctgtcccaactgttgctgataccgtttttgttgaaagg
attagatcacgtgttaaacattggaaaaatgcatgtacagactcgagtgcaaagacagat
gctgcagaggctttagtgatctccctgagaaaacttgtcttagggagtgaacagcacgga
tctagaccatgcatgactattgatgtttgtagtgaacgccaagtccagctagtactaaag
atgttggaagagttctcagaccttgttcctctattaatccctgcaaagagtggaggaacc
caggcagttcgtgttgttttgacaagttctgaagaggacagggatcttttaaagagggag
cttcaagatcttgaagtagaacaagataagagggtccgtggattccgagaggtgatcgat
ttgatttgtgcttcgcagaaacctgttgtctcccacaattcccttaatgattttgcattt
attcattcaaaatttctagctcctttaccacctaatgtggttgaatttatgtcttcctta
cgcatggctttccctcaagtacttgatgtcaaccatctgatgacagatattggtcctgca
agaaccagtatgtctgcaaatatgtcttatctaaagaataggttctttgctcccatagat
atggaaattccacacaaagctactgaaaatgaaagcaacattcatgggcataatgtggtg
aaaatttgtcatttgtttgggaagctatgttccgtactgaatctcactcctacttctagt
cgatccagcaaccatcatctggcttcagcttttgatggatatgcaaacatcttcaatctt
agctctgacagttgtcaagaaccaactgatgaagacatcagagtttggaccaacaacaca
cggaaagtaaggtgtgaggatgtggctttcttgtggggatttcgcaagaggatgtctgct
ggaacgctgaaaacccttctccgagggtccaatgaagtttttgccaaagaatttgatgtc
agattggtggataggagttgtgccatggtggtattttggcaacccagtttgcgtgaaact
tttgtggatataatgaacagcgaaaaaatttccggagctttaaaggaaatggtttctgaa
ggactaaaagcaacaggttatgagacctataaacgggtttgcagctcaggtttatgggag
ttagaattagctgacgccttggacaaagctttagctcttcctgactccaatttggaagat
gattatgaaacaaatacatcagaaatttattggtccaacgatttaaaaattaacttggat
gatctctga
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