KEGG   Pistacia vera (pistachio): 116126914
Entry
116126914         CDS       T07386                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pvy  Pistacia vera (pistachio)
Pathway
pvy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116126914
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvy03041]
    116126914
Spliceosome [BR:pvy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    116126914
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_TEP1_C PRP4 ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_SCAP WD_LRWD1 Beta-prop_Vps41 PROPPIN Endonuc-MspI WD40_like
Other DBs
NCBI-GeneID: 116126914
NCBI-ProteinID: XP_031268452
LinkDB
Position
Unknown
AA seq 578 aa
MEAEEENPASTSVLESSPAVPDNQTLMLTVETIPPHPVQPIIPPVVPAAIPPVVVPPIAP
IPTIPPPQVPAPLAPLPVRPPIFKPAMPPQNGEVRSSDSDSDHDDLGPTRAATGEYEISE
ESRQVRERQEKAIQDLLMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLR
MLMAKLDAEGQLEKLMKAHEEEEAAATATADDAEEEMIQYPFYTEGSKELLDARIDIAKY
SIVRAASRLQRACRKRDDPDENIDAEIDWALRQAESLFLDCSEFGDDRPLSGCSFSHDGN
LLATCALSGVAKIWSMPKVEKVSALKGHTERLTDVAFSPVQNHLATASADQTARLWNSDG
SLLNTFGGHLDRLARISFHPSGKYLGTTSFDKTWRLWDIDTGVELLLQEGHSRSVYGIAF
HHDGSLAASCGLDSLARVWDLRTGRSILAFEGHVKPVLGVSFSPNGYHLATGGEDNTCRI
WDLRKKKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTAKVWSGRDFKLVKTLSGHEA
KVTSLDVGADGCSIATVSHDRWIKLWSVNRKEQAMDVD
NT seq 1737 nt   +upstreamnt  +downstreamnt
atggaagctgaagaagaaaatcctgcatcaacttcagtgttggagtcttctccagcagtc
cctgataatcaaactctgatgcttactgttgaaacaattccacctcatcctgtccaacct
attattccaccagtggtcccagcagcaataccaccagtggttgtgccacctatagctcca
atacccacaattcctcctccccaagttcctgctccattagcacctctaccagtccgacct
cctatctttaagcccgctatgccaccacaaaatggggaggtgagaagcagtgactcggat
tctgatcatgatgacttgggtccaacacgggctgccacaggtgaatatgagatttcagag
gagagcagacaagtaagggaacgccaggaaaaggcaattcaggatcttctcatgaagcga
cgtgcttctgctcttgcggtgcctactaatgatatggctgtccgggctcgtcttcgccgg
cttggtgaacccataacactttttggggaaagagagatggaaagacgggatagattgcgg
atgcttatggcaaagctggatgctgaagggcagttggagaagctgatgaaagctcatgag
gaagaggaggctgcagctactgctactgcagatgatgctgaagaagaaatgatccaatac
cctttttatactgagggttcaaaggaactcttggatgctagaattgatattgcaaaatat
tctattgttagagcagcatctcgtcttcaacgtgcatgtaggaaaagggatgatccggat
gaaaacattgatgcagaaattgattgggctctgaggcaggcagagagtttgtttcttgat
tgcagtgagtttggggatgatcggccactctctggttgctccttctcacatgatgggaat
ctgctcgctacatgtgccttaagtggagttgctaagatatggagcatgccaaaagtggaa
aaggtttctgccttgaagggacacactgaacgtttgactgatgttgcattttctcctgtg
caaaaccatttggctactgcttctgctgaccagactgcaaggttgtggaactctgatgga
tctctcctgaatacttttggaggccatctggatcgtcttgcacgaatttctttccatcca
tcaggaaaatacttgggcacaaccagctttgacaagacatggagactgtgggacatagat
acaggagtagagttgcttcttcaagaaggtcacagtaggagtgtctatggaattgccttc
caccatgatggatctttggcagcttcttgtggactggattcgttggcacgtgtttgggac
ctccgtacaggaagaagtattcttgcctttgaaggtcatgttaagccggtcctcggcgtt
agtttttcacccaatggataccatctagcgactggtggtgaggacaatacttgtcgcata
tgggacttgaggaagaaaaaatctttatacgttattccagcacactctaatcttatatca
caagtgaagtttgagcctcaagaagggtacttcctagtgacagggtcatatgacatgaca
gctaaggtttggtctggccgagactttaagcttgtaaaaaccttgtcagggcatgaggca
aaagttacttctttggatgtcggtgcagatgggtgttccattgcgaccgtctcacatgat
aggtggatcaagctgtggtcggtcaatagaaaggagcaggctatggatgttgactga

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