Pistacia vera (pistachio): 116127017
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Entry
116127017 CDS
T07386
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
pvy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116127017
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116127017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116127017
04121 Ubiquitin system [BR:
pvy04121
]
116127017
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116127017
Enzymes [BR:
pvy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116127017
Spliceosome [BR:
pvy03041
]
Complex B
Other components
Prp19 complex
116127017
Complex C
Prp19-CDC5 complex
116127017
Ubiquitin system [BR:
pvy04121
]
Ubiquitin ligases (E3)
U-box type E3
116127017
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
116127017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
PROPPIN
WD40_like
Beta-prop_SPT8
Beta-prop_SCAP
NBCH_WD40
zf-Nse
U-box
WDR54
PAS_11
Beta-prop_DCAF12
V_ATPase_I_N
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
116127017
NCBI-ProteinID:
XP_031268543
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MNCSISGEVPDEPVVSKKSGLLFEKRLIERHISDYGKCPITGEPHTMDDIVPIKTGKIVK
PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAQADRQIMPMAASASVTSNASVLTNGKRVIESEDLGPGGKKLRPGISSSII
TKLTDCNATLSQQRKKRQIPPTLAPADALERYTQLSSHPLHKTNKPGIVSIDIHYPKDVI
ATGGVDSNAVLFDRSSGQLLSTLSGHSKKVTSVKFVAEGDQLLTCSADKTVRLWQGSEDG
NYDCRHIMKDHTAEVQAVTVHATNDYFVTASLDGTWCFYDISSGLCLTQVADNSGPEGRP
EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA
AHDGVKLWDLRKLKNFRSFEFNDSDTPTNSVDFDHSGSYLAIAGADIRIHQVASVKADWN
CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRFFGLPSDDGPSES
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatatccggcgaggtgccggatgagcctgtcgtctccaagaagtcaggt
ttactcttcgagaagcgcttaatcgagagacacatttcggattatggaaaatgcccaata
acaggagaacctcatactatggatgatattgttccaatcaaaacaggcaaaattgtgaag
cccagacccttaacagctgctagcatccctgggatgctaggaatgttccagaatgaatgg
gatggtttgatgctatctaattttgctttggagcaacaacttcatacagccagacaagag
cttagtcatgccctataccagcatgatgctgcttgtcgagtgattgctagacttaaaaag
gaaagagatgaagcaagggctttacttgcacaggccgataggcaaataatgccgatggca
gcatcagcgtcagttacatccaatgcttctgtccttaccaatgggaaaagagttattgaa
agtgaggatttgggccctggtgggaagaaattacgtcctggaatttcgtctagcattatt
actaagctaacagattgtaatgcaactctttcgcagcagcggaaaaaacgacagattcct
ccaactttggctcctgctgatgctttggagaggtatacccagctttctagtcatcccctt
cacaaaacaaacaaacctggcattgtttctattgatatccattaccccaaggatgtcatt
gcaactggaggggttgattcaaatgctgtactttttgaccgatcatcaggacagctctta
tctactctgagtggtcactcaaagaaggttactagtgtcaaatttgttgctgaaggtgat
caattattaacatgctcagcagataagacggttcgcttgtggcaaggctctgaagatgga
aattatgattgtaggcacatcatgaaagatcatactgcagaggtgcaagctgtaactgtc
catgccacaaatgactactttgtgactgcttctcttgatggcacatggtgcttctacgat
atttcctctggcttatgcttgacacaggttgcagacaactcagggcctgagggcagacct
gagggttatacatctgctgcttttcatcctgatggtctcatccttggaacaggcacctca
gaagctcttgttaagatttgggatgtgaaaagtcaggcaaatgttgcaaaatttgacgga
catgtaggggcagttactgcaatatctttctctgaaaatggatactaccttgcgactgca
gctcatgatggtgtgaagttgtgggatctgcgcaagttgaagaacttccggtcatttgaa
tttaatgattcagatacgccaacaaattctgtggatttcgaccatagtgggtcttacctt
gcaattgcaggcgcagatattagaatccaccaagttgccagtgttaaagcagattggaat
tgtatcaaaacctttcctgatttgtctggcacaggtaaggctacttgcgtgaaatttggt
ccagatgcgaaatacatagctgtaggatcaatggatcgaaacctccgcttttttgggctg
cctagtgatgatggcccatcggagtcataa
DBGET
integrated database retrieval system
