Pistacia vera (pistachio): 116128048
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Entry
116128048 CDS
T07386
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116128048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116128048
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116128048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
116128048
NCBI-ProteinID:
XP_031269579
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MQRQKSILSFFQKPSPTNRSLGAGDMHDERREAPFSLKQQNLNGAVLTQPTFPPTDDSSL
EIRGTDTPPEKLPRQILPTSFKANEDAKGGSSLFSSIMHKFVKADNRQNANRRSESNGVS
SNICSISGKVGDSEAVLERGAATQCPVKDNVSSFSGIVNQGSVLHSENDDGIPGPETPGT
HLVVPRLKRIQENSFKVGDKKDSSLLDSSKRVKLLLDSVTSTKNHGEEADKTSKFEWLDS
SHIRDANGRRPGDSLYDKKTLYIPPDVLKKMSASQKQYWSIKSQYMDVLLFFKVGKFYEL
YELDAEIGHKELDWKITLSGVGKCRQVGLPESGIDDAVQKLVARGYKVGRIEQLETSAQA
KAKANSVIPRKLVHVVTPSTTVDGNIGPDAVHLLAIKEGNYGLTNDSVVYGFAFVDCAAL
RFWVGSIEDDASCAALGALLMQVSPKEVIYESRGLCREAQKAIRKYSLAGYTAVQLTPAM
PTTDFVDASEVKNLIQSKGYFKGSSAPWNSALDCVMQHDISLSALGGLISHLSRLMLDDV
LRNGDILPYHVYRDCLRMDGQTLVNLEIFGNNADGGSTGTLFKYLDNCVTSSGKRLLRSW
ICHPLKDVEGINNRLNAVEDLMAHSEIMLAVAQYLRKLPDLERLLGRVKTRVQAAAALAL
PLIGKKVLKKQVKAFGSLVKGLRIGMDLLMLLQKEGHIALSLSKNFKYPVVDGGHDLDKF
LAQFEAAIASDFPNYQNHDVTDSDAETLSILIELFIEKADQWSEVIHSISCIDVLRSFAV
TASMSCGTMSRPHILPQSKLTALSQDARGPILKIKGLWHPFALAESGLPVPNDIILGEDS
DGYHPSTLLLTGPNMGGKSTLLRATCLTVILAQLGCFVPSAMCILSITDIIFTRLGATDR
IMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCR
LLFATHYHPLTKEFASHPHVTLQHMACAFKSNTENKLKIDQELVFLYRLTSGACPESYGL
KVAIMAGVPEKVVDVASHAGLVMKKSIGQSFKSSEQRSEFSSLHEEWLKGIVNFSETVDF
NCTEDDAYDTLFCLWHEIKSSYQLHN
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccaaaaatcgatcctctcattctttcagaaaccatccccgacgaatcggagc
ttaggcgccggagacatgcatgacgaacggagagaggctccgttttcgttgaagcagcag
aacctaaacggtgccgttctaactcagccgacgtttccacctacagacgactcgtctctg
gaaataagaggaaccgatactccgccggagaaattacctcgtcagattttaccgacgagc
ttcaaggcgaatgaggatgcaaaaggaggttcctcacttttctcgagtattatgcataaa
tttgtgaaggctgataataggcaaaatgctaaccggaggagtgaatcaaatggcgtttct
tctaatatttgctctatatctggtaaagttggtgactcagaagcagtccttgaacgtgga
gcagctactcaatgtcctgtaaaggacaatgtttctagtttcagcgggatagttaatcaa
ggaagtgttttacatagtgaaaatgatgatggtatccccggtccagagacaccgggtacg
catcttgttgttcctcgattaaagaggattcaagagaatagttttaaggtaggagataag
aaggatagttcattgctggattctagcaaaagagtgaaactacttctggattctgttact
agtactaagaaccatggtgaagaagctgataaaactagcaagtttgagtggcttgattct
tctcatattagagatgctaatggaagaagacctggtgattcactttatgacaagaagacg
ctttatataccaccagatgttttgaagaaaatgtcagcgtctcaaaaacagtattggagt
atcaaaagtcaatatatggatgttttgcttttctttaaagtggggaaattctacgagctc
tatgaacttgatgctgaaattggccataaggagcttgattggaaaattacattaagcggt
gttgggaaatgtcggcaggttggtttacctgaaagtggaattgatgatgccgttcaaaaa
ctggttgctcggggatataaagttgggcgaatagagcagttggagacatctgcgcaagca
aaagccaaagcaaattctgtaattccaagaaagttagtacatgtagtcacaccatcaacg
acagttgacggtaatattgggcctgatgctgttcatcttcttgccataaaagagggaaac
tatgggctgactaacgattcagttgtctatggttttgcttttgttgattgcgctgctcta
agattttgggttggctccattgaggatgatgcttcatgtgctgctttgggggctttattg
atgcaagtttcaccaaaagaagtaatatacgaaagtagagggctatgcagagaagctcag
aaagcaatcagaaagtactcattagcaggttatacagctgtgcaattaactccagccatg
cccactactgattttgtggatgcttctgaagttaaaaatttgattcagtcgaagggttac
tttaaagggtcttctgctccatggaatagtgcacttgactgtgtaatgcaacatgatatt
tcattaagtgctctaggtggacttattagtcatctatcgaggttgatgttagatgatgtc
ttaagaaatggagatatactaccatatcatgtttatagggattgcctcagaatggatgga
cagacactggtaaatcttgagatattcggtaacaatgctgatggcggttccacaggtaca
ttgttcaaatatcttgacaattgtgtaacatcatctggtaagcggcttttaaggagctgg
atctgccatccactgaaagatgttgaaggcattaataataggctcaatgcggttgaagat
ctaatggcacattcagaaattatgttggctgttgctcagtatctgcggaagcttccagac
ttggagaggttacttggcagggtgaagactagagttcaggcggcagctgctcttgcgctg
cccttgataggaaaaaaagtattgaagaagcaagtgaaagcatttgggtcccttgtgaag
ggcctgcggattggtatggatttgttaatgctattacagaaggaagggcatatagctttg
tcattatcaaaaaattttaaatatccagtcgtagatggtggtcatgatctggataaattt
cttgctcagtttgaagcagcaatagccagtgacttcccgaattaccagaaccatgatgta
acagattcggatgctgaaacactctctattctgattgagttatttatagagaaagctgat
caatggtctgaagttattcattccatcagttgtattgatgtattgagatcttttgctgta
actgcaagcatgtcttgtgggactatgtctagaccacatatattgcctcagtcaaaactt
acagcattgagccaggacgccagaggacccatactcaaaattaaaggactatggcatccg
tttgcccttgcagaaagtggactgcctgtcccaaacgacataattcttggtgaggattca
gatggctatcatcctagtactttgctattgaccgggcctaacatgggtggaaaatcaaca
cttctgcgggccacatgtttaactgttatattggcccagctgggctgttttgttcctagt
gcgatgtgcattctctcgatcacagacatcattttcacaaggcttggcgccactgataga
atcatgacaggcgagagtacatttcttgttgaatgtacagaaacagcatcagttcttcaa
aatgctactcaggattcgttggttattctcgatgaactgggtcggggaacaagcactttt
gatggctacgccattgcatatgcagtattccgccatctcattgagaaagttaattgtcgg
ttgctatttgcaacacattaccaccccctcacaaaggaatttgcttctcatcctcatgtt
acactgcaacatatggcttgcgctttcaagtcaaacactgaaaacaaattgaaaattgac
caggagctggttttcctttaccggcttacttctggggcatgcccagagagctatggattg
aaagtggccataatggctggtgtcccagaaaaggtggttgatgtggcctcacatgctggc
ctagtcatgaaaaaatcaattggtcaaagttttaaatcgagtgaacagagatcagaattc
tcaagtctccatgaagagtggttgaagggcatagtgaatttttcagagactgttgatttt
aattgtacagaggatgatgcttatgatactttgttttgtttgtggcatgagataaagagc
tcatatcaattgcacaactaa
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