Pistacia vera (pistachio): 116129880
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Entry
116129880 CDS
T07386
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116129880
09123 Folding, sorting and degradation
03018 RNA degradation
116129880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116129880
03041 Spliceosome [BR:
pvy03041
]
116129880
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116129880
mRNA cycle factors
Stress granule specific factors
116129880
Spliceosome [BR:
pvy03041
]
Complex C
Other components
Complex C specific factors
116129880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_7
Nup35_RRM_2
RRM_Nup35
BRAP2
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
116129880
NCBI-ProteinID:
XP_031271469
LinkDB
All DBs
Position
Unknown
AA seq
642 aa
AA seq
DB search
MAQVQVQPQAPVTAAANGVAGHGVGVQQFVSTALYIGDLDPNVNDSQLYDFFNQVGQVMS
VRVCRDLSTRRSLGYGYVNYSNPHDAARALDVLNFTPLNGKPIRIMYSYRDPTIRKSGSG
NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDLSGQSKGYGFVQFDNEESAKNAIDKL
NGMLLNDKQVFVGPFLRKQERDSSTEKIKFNNVYVKNLSESTTEDDLKKFFGEYGTITSS
VVMRDADGKSKCFGFVNFEDPDDAAQAVEALNGKKFDDKEWYVGKAQKKHEREVELKGRF
EQSLKEAVDKFEGLNLYVKNLDDSITDDKLKELFTEFGTITSCKVMRDPNGLSRGSGFVA
FSTAEEASLALMEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPAAIGPAVAPRMP
MYPPGAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNFFVPMVQPGQQNQRPGGRR
SGAGPLPQAQQPIPLMQPQMLPRGRVYRYPPGPNMPDVPISGGPGGMLPVSYDMGGMPFR
DTTPMQTGALASALANAAPDQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL
LESPEALKAKVSEAMEVLRNVAQQQQVTSPTDRMASLSLNAE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcaggtccaaccacaagctccagtgactgctgctgcaaatggagttgca
ggccacggtgttggagtgcaacagtttgtgtcaacagctctttacattggagatcttgac
cccaatgtcaacgattcgcaactttatgatttctttaatcaggtgggtcaagtcatgtct
gttcgggtctgtagagacttgagcacccgccgctctctcggttacggctacgttaattat
agtaacccccatgatgcggcaagggctttggatgttttgaattttactcctctgaatggc
aagccaattaggataatgtactcttatcgtgaccctactattcgtaaaagtgggtctgga
aatatatttatcaagaatttggacaagtcaatcgacaataaagctctacatgataccttt
tcgacatttgggaatattttatcttgcaaggtggctactgacctttctggtcaatcaaaa
gggtatggttttgtacaatttgataacgaggaatccgctaaaaatgcaattgacaagctg
aatggcatgctactgaatgacaagcaagtatttgttgggcccttcctgcgtaagcaggaa
agagattcttctacggagaagataaaatttaacaatgtttatgttaagaatctttcagaa
tcaacaactgaggacgatctaaagaaattttttggtgaatatggaactattactagctct
gtagttatgagagatgcagatggaaaatccaaatgttttggatttgtcaattttgaagat
ccagatgatgcagctcaagctgttgaggctcttaatggaaagaagtttgatgataaggag
tggtatgtagggaaagcacagaagaagcatgaaagagaagttgaattgaaagggcggttt
gagcagagcttgaaggaggctgtggataaatttgaaggacttaatttatatgttaaaaat
ctagatgatagcatcactgatgataaactaaaggaattattcacagaatttggcacaatt
acgtcgtgcaaggttatgcgtgatcctaatggtttaagtagaggatcaggatttgttgcc
ttttcaactgctgaggaagcatctctagctctcatggagatgaatggtaaaatggtagtt
agcaaaccactttatgttgctcttgcacagcgaaaagaagaaagaagagcaaggttgcag
gcacagttctcacaaatgcgtcctgctgctattggtcctgcagttgcccctcgtatgccc
atgtatccacctggtgctccaggtcttggacagcaactattttatggtcaagggcctcct
atcattcctccccaacctggatttggatatcagcagcaacttgtccctggaatgaggcca
aacttttttgtgccaatggtccagccaggtcagcagaatcagcggcctggaggcagacga
tctggagctgggcccctgccacaagcacagcaacctattccactaatgcagccacagatg
cttcctagaggacgtgtctaccgctaccctcctggtcccaacatgccagatgttcctatt
tctggtggtcctggaggcatgcttcctgtctcttatgacatgggtggaatgccattcaga
gatacaacacctatgcagactggggcgttggcttctgccctggctaatgcagcaccagat
caacaaaggacattgctgggagaaaatctataccctcttgtagaccagttagagcatgat
aatgcagcaaaagtgacaggcatgcttttagagatggaccagactgaggttttgcacttg
ctggagtcaccagaagccttgaaagccaaagtttctgaggcaatggaagttttaaggaat
gtagctcagcaacagcaggttactagcccaactgatcggatggcctcattgtctctgaat
gctgaatga
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integrated database retrieval system
