KEGG   Pistacia vera (pistachio): 116131617
Entry
116131617         CDS       T07386                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
pvy  Pistacia vera (pistachio)
Pathway
pvy03030  DNA replication
pvy03410  Base excision repair
pvy03420  Nucleotide excision repair
pvy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116131617
   03410 Base excision repair
    116131617
   03420 Nucleotide excision repair
    116131617
   03430 Mismatch repair
    116131617
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvy03032]
    116131617
   03036 Chromosome and associated proteins [BR:pvy03036]
    116131617
   03400 DNA repair and recombination proteins [BR:pvy03400]
    116131617
DNA replication proteins [BR:pvy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116131617
  DNA Replication Termination Factors
   ELG1-RFC complex
    116131617
Chromosome and associated proteins [BR:pvy03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116131617
DNA repair and recombination proteins [BR:pvy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116131617
  Check point factors
   HRAD17(Rad24)-RFC complex
    116131617
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_22 Rad17 RuvB_N Mg_chelatase AAA_11 AAA_16 AAA_5 AAA_14 AAA_assoc_2 nSTAND3 SLFN-g3_helicase nSTAND_NTPase5 ResIII AAA_24 AAA_2 PhoH AAA_28 AAA_19 AAA_7 DNAX_ATPase_lid AAA_30 AAA_25 RNA_helicase Parvo_NS1 NPHP3_N AAA_18 DUF815 bpMoxR NB-ARC TIP49
Other DBs
NCBI-GeneID: 116131617
NCBI-ProteinID: XP_031273138
LinkDB
Position
Unknown
AA seq 342 aa
MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMT
SRISYICKEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLYGSSISSKDLISVAGVI
PVEVVEAHFSACRSGDFDVANKEVNNIIAEGYPVSLFLSQLFDLVVEAEDISDEQKARIC
KHFGEADKCLVDGADEYLQLLNVTSHVMRALCNMPEEFHYDA
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccagtgttgcagagctcgcaaccttgggttgagaaatatcgacctaagcaagtg
aaggatgtggctcaccaggacgaggtggtgcgagtcctcaccaacactctcgagacaact
aattgtccgcatatgctcttttatggcccacctggaactggcaaaaccaccactgcactc
gccatcgcccatcagcttttcggacctgaactctacaaatctagagtactagagctgaat
gctagtgatgaccgtgggatcaatgttgtccgtactaaaatcaaagattttgctgctgtg
gctgtaggttctggtcagcgtcaaggggtttatccttgtcctccatacaagattattatc
cttgatgaggctgattcgatgactgaagatgcccagaatgctctaagacgtacaatggaa
acttactccaaagttacaagattcttttttatttgtaattacatcagcaggatcatagag
ccccttgcttcaagatgtgcaaagtttaggttcaagccactttctgaggaaattatgact
agccgaatatcttatatctgtaaggaagaaggactcaatttggatgcagaggctctatca
actttaagttctatctcacaaggtgatcttcgacgggctattacatacttgcaaggagct
gctcgcttatatggatcatcaatttcttctaaggatctaattagtgtggccggggtcatc
ccagtggaggtagttgaggcacatttttcggcatgcagaagtggtgactttgatgttgca
aacaaggaagttaataacattattgcagagggatatccagtctctctgtttctttcccag
ttatttgatttagttgtggaagctgaagatatatctgatgagcagaaggctcgaatatgc
aaacatttcggtgaagcagacaagtgtttagttgatggcgcggatgagtacttacagcta
ttaaatgtgacaagtcatgtaatgcgagctctgtgtaacatgccagaagagtttcattat
gatgcttag

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