Pistacia vera (pistachio): 116132318
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Entry
116132318 CDS
T07386
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03013
Nucleocytoplasmic transport
pvy03015
mRNA surveillance pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116132318
09122 Translation
03013 Nucleocytoplasmic transport
116132318
03015 mRNA surveillance pathway
116132318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116132318
03041 Spliceosome [BR:
pvy03041
]
116132318
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116132318
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116132318
Spliceosome [BR:
pvy03041
]
Complex C
Other components
EJC/TREX
116132318
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116132318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
116132318
NCBI-ProteinID:
XP_031273831
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGETRDNEYEDELLDYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKSHKDLLKNECPQIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaccagggacaacgagtacgaagatgagcttctcgactatgaggaagaagat
gcccaagctcctgactctgtcgctaccaaagccaatggcgaagccgccaagaagggctat
gttggaattcacagttcaggattcagggacttccttttgaagccagagcttcttcgagca
atcgtggactctggatttgagcatccatcagaagtgcaacatgaatgtatacctcaagct
attctgggcatggacgtgatttgccaagctaaatctgggatggggaagaccgcagttttt
gttctgtcaactttacagcaaactgagccaaacccgggccaagttactgcacttgtttta
tgtcatactagggagttagcttatcagatctgccatgagtttgagaggttcagtacttac
ctgcctgatataaaggttgctgtcttttatggtggtgttaatatcaaaagtcacaaagac
ttgctgaaaaatgaatgtcctcaaattgttgttggcacacctggaagaatattagctctt
gcaagagataaagacctctcattgaagaatgtgaggcattttatccttgatgaatgtgac
aagatgcttgaatcacttgacatgagaagagatgtgcaggagatattcaagatgactcct
catgataagcaagttatgatgttttcagcaacactcagcaaagaaatccgcccggtctgc
aagaaatttatgcaagatcccatggaaatatatgttgacgacgaggccaagttgactctt
catggtcttgtacagcactacatcaaattgagcgagctggagaagaatcggaagctgaat
gacctccttgatgcattggactttaatcaagttgttatttttgttaaaagtgtgagcaga
gctgcggagttgaacaagttactggttgaatgtaattttccctctatatgcatccattct
ggaatgtcccaggaggaaaggttgacgcggtacaagggtttcaaggaggggaacaagagg
attcttgtggccacggatttggttggaagaggaattgacattgagcgtgttaatattgtc
atcaattatgacatgccagattcagctgatacctatcttcacagggttggtagagctggt
aggtttggtactaagggtcttgcgattactttcgtctcctctgcatctgattccgacatt
cttaatcaggttcaagcaaggtttgaggtggatataaaggaacttccagagcagattgat
acatctacatacatgccatcataa
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