KEGG   Pistacia vera (pistachio): 116132581
Entry
116132581         CDS       T07386                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pvy  Pistacia vera (pistachio)
Pathway
pvy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116132581
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvy03019]
    116132581
Messenger RNA biogenesis [BR:pvy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116132581
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116132581
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 116132581
NCBI-ProteinID: XP_031274103
LinkDB
Position
Unknown
AA seq 141 aa
MVLDAFVVSLDTLTVGQSTHCILSAPYPFICLAEKILVLLRDGRKLLGLLRSFDQFANVV
LEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSTAEIKRAQKA
EKDATVLKGSMRKRMEFLDFD
NT seq 426 nt   +upstreamnt  +downstreamnt
atggttttggatgcatttgttgtttccctggatactttgactgtaggacagtcaactcat
tgcatattgtctgctccttacccttttatatgccttgcagaaaaaattcttgtcttgctg
cgtgatggtcgaaagctcttgggcctactccgttcctttgatcaatttgctaatgttgtt
cttgaaggtgcttgtgagcgaattattgttggagatctttactgtgacattcccttaggt
ctatatgtaatccgtggggagaatgttgttttaattggagagctggatttagaaaaggag
gagcttcccccgcatatgactcgtgtatcaacagcagaaataaaaagagctcagaaagca
gaaaaggatgctactgttttaaagggctccatgagaaaaagaatggagttccttgatttt
gattaa

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