Pistacia vera (pistachio): 116134227
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Entry
116134227 CDS
T07386
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03030
DNA replication
pvy03410
Base excision repair
pvy03420
Nucleotide excision repair
pvy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116134227
03410 Base excision repair
116134227
03420 Nucleotide excision repair
116134227
03430 Mismatch repair
116134227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvy03032
]
116134227
03036 Chromosome and associated proteins [BR:
pvy03036
]
116134227
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116134227
DNA replication proteins [BR:
pvy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116134227
DNA Replication Termination Factors
ELG1-RFC complex
116134227
Chromosome and associated proteins [BR:
pvy03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116134227
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116134227
Check point factors
HRAD17(Rad24)-RFC complex
116134227
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
AAA_22
Rad17
Motif
Other DBs
NCBI-GeneID:
116134227
NCBI-ProteinID:
XP_031275759
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MPSPSPIPRSSSYPNIPSSSAKTHSLIPPPSNRSVCSARSTAKLSYWRLGNFIIPGRKSP
DSSSKHSDLTEESLEAHNRRHAPIIHNKFTADEKNAKCSPYYKGLTDASLVINRGRFVSS
PGRESHATTMATSTSSSLSSFMVKMQEWSSCFTFKSPNPTTSVPLKKHNRPTSSSYFTST
KTTISTSVKEMNLDKEDVYPEKPLRERVSESSTTFTSQSKHTNIQIDRGKEFIWANKYQP
KTLKDFICNRDKVIQLRDLVEEGGCRNFIFEGPPGAGKRTMICAMLREAFGPDTVQTREV
CKVFELKGELIGSIKVKVKESSQHIEVNVSDLKGYEKHVILELMKETQSKLSNKGLQSNP
DNSKAILLCEADKLSTDALLYVRWLLERHKGLNNIFFCCSDVSKLQPIKSLCTVVQLFPP
SKQEIVEVLEFIAKQEGIELPHKFAEKIANKSKNNLRQAIRSFEASWQMNYPFKDDQEIL
TGWEDDITNIAKKIIEEQSPKQLYVIRGKLQNLIEHDVSLEFIFKSLVEELKKHSDAGLH
SCIDDLYDEYNRDDGGMLDDEKPSVFARSTRHEEMGKRLNDPVRKNVQHFLRIEEFIAKF
MSRYKARVTNNRSDQQDTAA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtccatcaccaattccacgctcatcatcttatcccaacatcccgtcatcatca
gccaaaactcacagtttgatccctcctccctcgaaccgctctgtttgctcggctcggtca
accgccaaactctcgtattggcgacttggaaactttataatccctggaagaaagagccca
gattcctcgtccaagcattccgacttaacagaggagagtcttgaggcccataatagaaga
cacgcgcctattattcataataaattcactgcggatgaaaagaacgcgaaatgcagtccc
tactacaaaggactcactgatgcatcccttgtcatcaaccgtggaagatttgtttctagt
cctggacgtgaaagtcatgccaccaccatggccacttctacttccagctctctttcctct
ttcatggtcaaaatgcaagaatggagttcttgctttacctttaaatcacctaatcctact
acctctgttccgctcaagaaacataatcgtcctacttcctcttcttattttacttcaact
aagacaacaatatcaacttccgttaaggagatgaatttggataaagaggacgtttatccg
gagaagccattgagggagagagtatcagaatcatccacaaccttcacatcccaatcaaaa
catacaaatatccaaatagacagaggaaaggagtttatatgggcaaacaagtatcagccc
aaaactttaaaagattttatttgcaatcgagataaagtgattcaactgcgggatctggtg
gaagagggaggatgccgaaattttatatttgaaggaccaccgggggcgggaaaaagaacc
atgatttgtgctatgcttcgagaagcattcggaccggacacagtccagaccagggaggta
tgcaaggtgtttgaattaaagggggaactaataggtagtatcaaagtaaaggtcaaggaa
tcttcccaacatatagaagttaatgtctctgatttaaaaggatatgaaaagcatgtcatt
cttgaacttatgaaggaaacacaaagcaagctatccaataaaggtttgcagtcaaaccct
gacaacagcaaagcaattcttttatgtgaagcagacaagctatccacagatgccttacta
tacgtcaggtggttattagaaaggcacaaagggttaaataacatttttttctgctgctct
gatgtctcaaagcttcaacccattaagtcgctttgcactgttgttcagctttttcctcct
tcaaaacaagagatagttgaagttctggaatttatagctaaacaagaaggcatagaattg
ccacataaatttgctgaaaaaattgctaacaaatccaagaataatcttcgtcaagcaatt
cgctcatttgaggcctcttggcagatgaattatccatttaaggatgaccaagaaatattg
actggctgggaagatgacattacaaatattgccaagaaaattatcgaagagcaaagccca
aaacagttatatgtcatccgagggaagcttcaaaatctaatagagcacgacgtatctctt
gaattcattttcaagtctcttgttgaagaactaaaaaagcattcggatgcgggattacac
agttgtattgacgatctttatgatgaatacaatagagatgatggaggaatgcttgacgac
gagaagccatctgtctttgcacgcagtactcgacacgaggaaatgggaaagaggctaaac
gatccagtgagaaagaatgttcaacatttcttgaggatcgaagagtttatagcgaagttc
atgagcagatataaagcaagagtgacgaataatagaagcgaccaacaggatactgccgca
taa
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