Pistacia vera (pistachio): 116134937
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Entry
116134937 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116134937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116134937
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116134937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
116134937
NCBI-ProteinID:
XP_031276475
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MCNLLDTKSSRVSSSFSEKNGAVDKLSAKKSDSAKALVPKDKQDTMNNRKYSKNEVVQVS
TRSSDSSSTVMSKDRHGSHSSDAVSICLSDAHDSSGSSTNIAQLQSGPSNTKNSSLSLKS
GSSSSVNARRKNSNTQYKPEKWMLPDNTGDRLTQLNLAIVGHVDSGKSTLSGRLLFLLGR
ISQKEMHKYEKEAKLQGKGSFAYAWALDESTEERERGITMTVAVAYFDSKKXHVVVLDSP
GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMDSTKGQTREHAQLIRSFGVDQLIVAV
NKMDAVQYSKDRFESIKLQLGTFLRSCKFKDSSVSWIPLSAIENQNLVAAPSDVQLSSWY
QGPCLLDAIDSLQPPARDFSKPLIMPICDVVKLQHGHVSACGKLEAGALRSGMKVLVMPS
GDIGTVHSLDRDSQACAVARAGDSVGVSLQGIDVSHVMAGGVLCHPDFPVAISTHLELRV
LVLDFAAPILIGSQLEFHIHHAKEVARIVKIVSLLDTKTGKVTKKAPRCLTAKQSAVVEV
ALQGPVCVEEFSNCRALGRVFLRALGRTIAVGIVTRIIEDQL
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaatcttctagacacgaaatcttccagagtttcctccagtttctctgagaaaaat
ggtgcagttgataaattaagtgccaaaaaatctgatagtgccaaagcattagtgccaaaa
gacaagcaagataccatgaataatagaaaatattcgaagaatgaagtagtacaagtaagc
actagaagttcagatagctcttctactgtaatgtcaaaagacagacatggcagtcattct
agtgatgcagttagcatctgtttaagtgatgcacatgatagcagtggttcttcaactaat
atagctcaactacaaagtggtcccagtaatacaaagaactcgtcattgtctcttaaatct
ggaagctcatctagtgttaatgctagaagaaagaattcaaatacacagtataagcctgaa
aaatggatgcttcctgacaatacaggagatagattgactcaactaaatcttgcaatagtt
ggccatgttgattcgggaaaatcaacactctcaggtagactgctgtttcttctcggacga
atatctcaaaaagaaatgcacaaatatgaaaaagaagccaaattacagggcaaaggatcc
tttgcttacgcttgggcattggacgagagcactgaagaaagggaacggggaattactatg
actgtcgctgttgcatattttgattccaaaaaataacatgttgttgtgcttgactcccct
ggccataaggattttgttccaaacatgatatctggagcaacacaatctgatgctgcaatt
cttgtcatagatgcctcggtcggttcatttgaagttggtatggacagtacaaaagggcag
acaagggagcatgcacaactcattagaagttttggtgttgatcaacttatagttgccgtc
aacaagatggatgctgtgcaatattccaaagatcggtttgaatcaataaaactacaactt
ggaacatttcttcgttcttgtaaatttaaggattcctccgtgtcatggattccattgagt
gccattgaaaatcaaaatttggtggcagctccttctgatgttcagctttcatcttggtat
caggggccctgtctgttggatgcaattgattctttacaacctcctgctagagatttttca
aagcctctaattatgcccatatgtgatgttgttaaattacagcatgggcatgtgtctgcc
tgtggtaaattggaggctggagctcttcgaagtggaatgaaggtcttagtcatgccatct
ggagatataggcactgtgcattccctagatcgtgactctcaggcttgtgccgttgcaaga
gctggagatagtgtaggtgtcagtcttcaaggtattgatgtaagccatgtgatggctgga
ggtgtgttatgccaccctgatttccctgtcgcaatttcaacacatttggagctgagggtg
cttgttttggattttgcagctcctattttaattggttctcagttggaatttcatatacac
cacgcaaaggaggttgcaagaattgtaaagatagtgtcattacttgatacaaagaccgga
aaagttacaaaaaaggcaccccgctgtcttactgcaaagcagagtgcagtagttgaggta
gctttgcaaggaccagtctgtgtggaggagttctcaaactgtagagctctcggtagagtt
tttctaagagctttaggaagaactattgctgtaggcattgtaacccgtataattgaggat
caattatag
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