Pistacia vera (pistachio): 116137549
Help
Entry
116137549 CDS
T07386
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116137549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116137549
03012 Translation factors [BR:
pvy03012
]
116137549
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116137549
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116137549
Translation factors [BR:
pvy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116137549
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
FoP_duplication
nSTAND3
Rad17
AAA_19
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
116137549
NCBI-ProteinID:
XP_031279105
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MSQRFLGANFTFFSSKHFFSFLAAPTTVQRLSIPTSITFAMSYRPNNQGGRRGASSSSSG
RRGGGGGGRRGGGGRGGGRGGGRGGEQRWWDPVWRAERLRQQAAEMETLDENEWWGKMEQ
MKSAEEQEMIIKHNFSRADQQTLSIMAYQLGLYFHAYNKGKALVVSKVPLPMYRADLDER
HGSTQKEIKMSTEIERRVGNLLNSSQGTVTVNNSGVASDQGGKQVSLNVKIANPVSVADT
DANKEKLNFELKERQEKLMASNSVKAMQSLRENLPAFKMKAEFLKAVAENQVLVVSGETG
CGKTTQLPQFILEEEISGLRGANCNIICTQPRRISAISVAARISSERGENLGDTVGYQIR
LESKRSAQTRLLFCTTGVLLRQLVEDPDLNHVSHLLVDEIHERGMNEDFLLIILCDLLPR
RPDLRLILMSATINADLFSKYFGNAPIIHIPGLTFPVADLFLEDVLQKTHYNIKSEFDSF
QGNSRRKRREQDSKKDHLTALFEDVDIDSTYKNYSASTRASLEAWSGSQLDLGLVESTVE
YICRHEGDGAILVFLSGWDEICKLLDKIKVNRFLGDPSKFLVLPVHGSMPTINQREIFDL
PPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASARQR
RGRAGRVQPGVCYKLYPRIIHDSMLEYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKAL
QPPDALSVQNAIELLKTIGALDDMEDLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPAL
TIAAALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGYKDAKCNRRERDFC
WENYLSPVTLQMMEDMRNQFLDLLSDIGFVNKSKGANAYNQYSHDLEMVCAILCAGLYPN
VVQCKRRGKRTAFYTKEVGKVDIHPASVNAGIHTFPLPYMVYSEKVKTTSIFIRDSTNIS
EYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLNRKIEEPGFD
LSVEGKGVVSAVVELLHSQNVHY
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcggtttctcggagcgaacttcactttcttttcttccaaacatttcttctcg
tttttagccgcgccaacaacagtacaaagactttcgatcccaacctcaataacctttgcc
atgtcgtaccgccctaacaaccaaggcggtcgccgcggcgcgtcctcatcgtcctccggt
cgccgcggaggcggcggcggaggcagacgtggaggcggcggacgcggtggaggtcgtggt
ggaggtcgcggcggcgagcagcgatggtgggacccggtatggcgtgccgagcgcttgcgc
cagcaagcagccgagatggaaactcttgatgagaatgaatggtggggtaagatggagcaa
atgaaaagtgcagaagagcaagagatgataataaagcataacttcagtcgtgcagaccag
caaaccttgtctattatggcttatcaattaggtctttactttcatgcatataataaaggg
aaggcacttgtggttagcaaagttcctttaccaatgtatcgggcagatcttgatgaacgt
catggatccacacagaaagagattaagatgtctacagaaattgaaaggagagttggaaac
cttttgaatagctcacaggggacagtaactgttaataattctggtgtggcatctgaccag
ggaggcaaacaagtgtcactcaatgtaaaaatagctaatcctgtctctgtggcagatact
gatgctaacaaggagaaacttaattttgaacttaaggagaggcaggagaaactgatggct
agtaacagtgtgaaggccatgcaatctctccgagaaaatcttcctgcattcaaaatgaaa
gctgagtttctgaaggctgttgcagaaaatcaggtattagtagtttcaggagagacaggt
tgcggtaaaacaacgcagcttcctcagtttattttggaagaggagatatcaggtctgcgt
ggtgctaattgcaacataatttgcactcaacctcgtcgtatatctgccatatctgttgca
gctcgaatatcctcagaaagaggagagaatcttggtgacactgttggttatcagattcgc
ctggagtcgaagcgttctgctcaaacaaggctactcttttgcaccactggagtattactt
cggcaattggttgaggacccagatttaaaccatgtgagccatttgctagttgatgaaatt
catgaaagaggaatgaatgaagactttttgttaataattttgtgtgaccttcttccccgg
cgtccagatctccgtctcatcctgatgagtgctaccattaatgctgacttgttctccaaa
tattttggaaatgccccaattatacacattccgggattgacttttcctgtggcagattta
tttctagaagatgttttgcagaaaacccattacaacataaagtcagagtttgacagcttc
cagggaaactcaagaagaaaaaggagagagcaagattcaaagaaagatcatttaactgct
ttatttgaggatgttgatattgattctacctataaaaattacagtgcatctactcgagca
tctcttgaagcttggtcaggttcacagcttgatttgggtttggtggagtcaacagttgaa
tatatctgtcgccatgaaggtgatggagcaattcttgtattcctctcgggttgggatgag
atttgtaagctacttgacaagattaaagtaaacagatttcttggagatccgagcaagttt
ctagtccttcctgtacatggttcaatgccaaccatcaatcaacgtgaaatatttgacctt
ccgccccctaacaagagaaaaattgttctggcgacaaatattgcagagagtagtatcacc
atagatgatgttgtgtatgttgtagactgtggaaaggcaaaggaaaccagctatgatgct
ctaaacaagttggcttgcctgttgccatcatggatttcaaaggcttcagcacgtcagaga
agaggtcgtgctggccgtgttcaacctggggtttgttataaattgtatccaagaataatc
cacgattcaatgcttgaatatcagctgcctgaaattcttcgtacacctttgcaagagctg
tgcctccatatcaaaagcttgcagcttggaactgttgggtcttttttggcaaaggcactt
cagcctccagatgccctgtctgttcaaaatgcaattgaacttcttaaaacaattggagct
ttagatgatatggaagaccttactccacttggacgccatctctgcacactgcctgtggat
ccaaatatcggaaagatgcttctaatgggagccatctttcaatgcctcaatcccgcttta
acaattgcggctgcccttgcacaccgtgatccatttgtccttccaataaataggaaagag
gaagctgatgcagcaaaaagatcatttgccggtgattcttgcagtgaccacatagcactt
ctcaaagcatttgaaggttataaggatgcaaaatgcaatagaagggaaagagatttctgt
tgggaaaattatctatctccagtaaccttgcagatgatggaggatatgagaaaccagttt
ctggatctactatcagatataggctttgtgaacaaatccaagggtgctaatgcttacaac
cagtatagccatgatttggagatggtatgtgcaatcttgtgtgctgggctctacccaaat
gttgtacaatgcaaaagaagaggaaagcgtacggcattctacacaaaagaagttgggaaa
gtggacatccatcccgcttccgttaatgctgggattcatactttccctctgccttacatg
gtttacagtgaaaaggtgaagacaactagtatctttatccgagattcgacaaacatatca
gaatatgctttgttactatttggtggcaatctcattccaagcaaaactggggagggtatt
gaaatgcttggtggttaccttcatttctctgcatcaaagagtgtgttagagttgatacgg
aaattgcgaggggagcttgacaagcttttgaataggaagattgaggaaccagggttcgac
ctttctgtggagggaaagggagtggtttctgctgtggttgagttactgcatagtcaaaat
gtacactactaa
DBGET
integrated database retrieval system
