Pistacia vera (pistachio): 116137568
Help
Entry
116137568 CDS
T07386
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116137568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116137568
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
116137568
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
2OG-FeII_Oxy_5
Motif
Other DBs
NCBI-GeneID:
116137568
NCBI-ProteinID:
XP_031279125
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MSLDLSLKSACSGCGIGSPVELYGSTCKHMTLCLTCGKTMAQNKGKCFDCGAVVTRLIRE
CNVRPSASADKHYFIGRFLSGLPKFTNMKNSEWTLQKEGLQGRQVTDTLREKYKNKPWLL
EDETGQFQYHGHLEGAQSATYYLLVPANKEYIAVPAGSWFNFNKVAQYKQLTLEEAEEKM
KNRRKTADGYERWMMKAANNGAAAFGEVEKNLDDKESAGTGGRGRKKSGEDDEGNVSDKG
EEDEEEEAARKNRLGLNKRSGDDDEEGPRGGDLDLDDDDVEKGDDWEHEEIFTDDDEAVG
NDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGGLSKSGKELKKLLGRTNGLNESEAEDD
DDDDDDMDDDIGFSSAPAPKQKDTPKKEEPADNSPSKPAPSGAKGTPASKSVKGKRKSNG
DDAKTSNSTPLKKAKTENDAKTSVKEENGSGSRSAGPPRGTQSSSSKTGSAAASGPVTEE
EIRAVLLQKAPVTTQDLVANFKARLKSSEDKRAFADILRRISKIQKTNGPNNYVVLRDK
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttggatctgtcattgaagtcggcgtgtagcggatgtggaattggatcccctgtg
gaattgtatggaagcacctgtaagcacatgactctttgcctcacgtgtggcaaaaccatg
gctcagaacaaaggcaaatgtttcgattgtggcgccgtcgtcactcgcttgattcgagag
tgtaatgttcggccgagtgctagcgctgacaagcattactttatcggaagatttttgtct
ggactgccaaaatttacgaacatgaaaaattcagaatggacgcttcagaaagaaggacta
caagggcgccaagttactgatactttgcgggagaagtacaagaataagccttggctcttg
gaggatgaaacaggccagtttcaataccatggtcaccttgaaggcgctcagtcagcaact
tactacctgctagtgccggctaataaagaatatattgctgttcctgctggttcttggttt
aattttaacaaggttgcacaatataagcaacttaccttggaggaagccgaagaaaagatg
aagaacaggaggaagactgcagatggatatgaaagatggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaagtagaaaaaaatttggatgacaaggagagtgctgggaca
ggtgggagaggacgcaaaaaaagtggtgaggatgatgaaggtaatgtctcagataaggga
gaagaagatgaagaagaggaggcagctaggaagaacagacttggactcaataaaagaagt
ggtgatgatgatgaagaaggtccaagaggaggtgatcttgatttggatgatgatgatgtt
gagaagggtgatgattgggaacatgaggaaatttttactgatgatgatgaagctgttggt
aatgatcctgaggagcgggaagatttagcccctgaagttcccgctccgccagaaattaag
caggatgaagaggatgaagatgaagaagaggagggaggaggactgagcaaatctggaaaa
gagttgaagaagctgcttgggcgaactaatgggctaaatgaatcagaagctgaggacgac
gatgacgatgatgatgatatggatgatgacattggcttttcttctgcgccggctccaaag
cagaaggatacacctaagaaggaggagcctgctgataacagtccatcaaaaccagctcct
tctggagccaagggaactcctgcttccaagtctgttaagggtaagaggaaatctaatggt
gatgatgcaaaaacatctaatagtacacctctaaagaaggcgaagactgaaaatgatgct
aaaacttctgtaaaggaggaaaatggatctggttcaagaagtgctgggcctccaagaggt
acacaatcatcatcatcgaaaacagggtcagctgctgcttctggtccggtcactgaagaa
gaaatcagggctgttttactgcagaaggcacctgtgacaacacaggatcttgttgctaat
ttcaaagcaagactgaaatcctctgaggataagagggcctttgcggatatcctgaggaga
atttcgaagatacagaagaccaatgggcctaacaactacgtcgtattgagagataaatga
DBGET
integrated database retrieval system
