Pistacia vera (pistachio): 116137589
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Entry
116137589 CDS
T07386
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy04120
Ubiquitin mediated proteolysis
pvy04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116137589
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
116137589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvy04121
]
116137589
Enzymes [BR:
pvy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116137589
Ubiquitin system [BR:
pvy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116137589
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116137589
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
zf-C3HC4
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
WD40_like
WD40_RFWD3
Beta-prop_EML
zf-C3HC4_3
Beta-prop_SCAP
zf-RING_2
zf-RING_UBOX
Beta-prop_DCAF12
Beta-prop_WDR75_1st
zf-RING_5
zf-C3HC4_4
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
116137589
NCBI-ProteinID:
XP_031279146
LinkDB
All DBs
Position
Unknown
AA seq
674 aa
AA seq
DB search
MVESSMVGFLVPAVKSEQQPPSTADAPSQPMLMAAEEEAETETNKDTLCPICMEIIKDAF
LTACGHSFCYMCIFTQLRNKNDCPCCGYFLTTKHIFPNLLLNKLLKRTSAAQVAKSVSPV
QHLHQALQQGCEVSVKEVDGLLALLEEKKRKMEQKEAQTNMQILHEFLYFLRKQKLEELN
EIQTDLQSIKEDIHAVEKHRKELHMARERCLLKRRTLDDVSAPKPGPLQIDKNSKGISSK
AHNVQGWLVSSNSHNSQKNTDEMAQVSSQGVQIRDVCGVSGSQHVTQLGLPTARKRRVQA
QFNDLQEYYLQKRRHWARQSHKQGGRDNSAINKEGYNPALKDFQSVLTNFTQYSRLRVIA
EPRQGDLFHAANIVSSIEFDRDNELYATAGVSRRIKIFEFSSMFNEPTDVHYPITEMPTR
AKLSCLSWSNCTKNHIASSDYEGIVTVWDVMTSQSVMEYEEHEKRAWSVDFSCTEPSMLV
SGSDDCKVKIWCTKQEASAFSIDMKANICSVKYNPGSSIHLAVGSADHNIHYYDLRNISQ
PLSVFSGHKKTVSYVKFLSENELASASTDSTLRLWDVRENSPIRTFRGHTNDRNFVGLSV
NSEYIACGSETNEVFVYHKAVSKPAASYRFSSDIEDADNNVAPYFISAICWKSDSPTMLT
ANSKGTIKVLVLAA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggtggagtcctcaatggttggctttctagttccagctgtgaaatcggaacaacagcct
ccgtcaacggcggacgcgccgtcacaaccgatgctgatggcggcggaggaagaggcggag
acggagaccaacaaggataccttgtgtccgatatgcatggagattataaaggacgcgttc
ttgactgcttgtggacatagtttctgttacatgtgtattttcactcagttgagaaacaaa
aatgactgtccttgttgcggttatttcttaactaccaaacatattttccctaatttattg
ctcaataagttattgaagagaacgtctgctgctcaagtagcgaagtctgtatcaccagtt
caacatctacatcaagcattacaacagggctgtgaggtgtcagttaaggaggtagatggc
ctattggctttacttgaggagaagaagagaaagatggagcaaaaagaagcccagaccaac
atgcaaattctacatgaatttttgtattttctgcggaagcaaaagcttgaagagctcaat
gagattcaaactgatcttcagagcattaaggaggacatacatgctgtagagaaacataga
aaggaattacacatggctagagagagatgcttactaaaacgaaggactcttgatgatgtc
agtgcaccaaaaccaggacctttacagatcgataaaaatagcaaaggcattagctctaag
gcccacaatgtacaagggtggctagtttcatccaattcacacaattcacagaagaatact
gatgagatggctcaagtaagctctcaaggtgtccaaattagggatgtttgcggtgtgtct
ggttcacaacatgttactcaactcggactgcctactgcaagaaaaaggcgagtccaagct
cagttcaatgacttgcaagagtattacttacaaaaacggcggcattgggccagacaatca
cataaacagggaggaagggacaatagcgcaataaataaagaaggctataatcctgctctt
aaggatttccaatctgtgctaactaattttactcagtacagtcgattgagggtcattgct
gaaccaaggcagggggaccttttccatgctgcaaatattgtctcgagtatagaatttgat
cgtgataatgaattgtatgctactgccggagtttcaaggcgcattaagatttttgaattt
tcctcaatgtttaatgaaccaacagatgtgcattatcccattacggaaatgcccactcga
gctaaacttagttgcttgagttggagcaattgtacgaaaaatcacattgcgagcagtgat
tatgaggggatagtaactgtttgggatgtaatgactagtcagagtgtgatggaatatgag
gagcatgagaaacgggcttggagtgttgatttttcatgtactgaaccttctatgcttgta
tctggtagtgatgactgcaaggttaaaatctggtgcaccaagcaagaagcaagtgctttt
agcattgatatgaaagcaaatatttgttctgtcaagtataatccagggtccagtattcat
ttagcggtgggttccgcagatcacaatattcactattatgatttgagaaatattagccag
ccactttctgtgttcagcggtcacaagaaaactgtttcatatgtgaaatttttatctgaa
aatgaactggcttctgcatctactgacagcacattgcgcttgtgggatgtaagggaaaat
tctccaatacgcacttttagaggccacaccaatgacaggaattttgtgggtctctcagta
aacagtgaatacatagcctgtggtagtgaaacaaatgaagtgtttgtgtatcataaggcg
gtctccaaacctgcagcttcctacagatttagttctgatatagaagatgctgataacaat
gtggcaccatatttcatcagtgcaatttgctggaagagtgatagcccaacaatgttgact
gcaaacagtaaaggaacaataaaagtacttgtactcgcagcctaa
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