Pistacia vera (pistachio): 116138031
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Entry
116138031 CDS
T07386
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116138031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116138031
03036 Chromosome and associated proteins [BR:
pvy03036
]
116138031
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116138031
Coactivators
SAGA/TFTC/STAGA complex
116138031
Chromosome and associated proteins [BR:
pvy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116138031
STAGA complex
116138031
TFTC complex
116138031
SAGA complex
116138031
SLIK complex
116138031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_VPS8
Beta-prop_DCAF12
PALB2_WD40
Beta-prop_EDC4L
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
116138031
NCBI-ProteinID:
XP_031279599
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MDDSRLTDFVTTFLKKKGFNEAETAFRAELQRKNNNSSNNNSIDVLNDPELSKFFRSFSE
SEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKKHIQEARTFFNS
FREDHEMLHLRDLQKLEGVLTPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQC
TKMLGIINERINFEVSPGQPSSISDDAEIVTLIGSNQDAANKINQKEVHWGLLEDSLESR
LEKTGGLLSDSEKAEGENKEGEVDENKKRSVEGGKQGTSMKKLKKDKAINATAKTSRPEA
NTVPVAPRVKSELALPVMPVEVEQSFLEDLRNRVQLSSVALPSVCFYTFINTHNGLNCAS
ISHDGSLVAGGFSDSSLKVWDMAKLGQQTRSLLVSAVSQGENDTTAKEDTLGANGSKRSY
TLFQGHSGPVYSASFSPLGDYILSCSADATIRLWSTKLNANLVCYKGHNYPVWDVQFSPL
GHYFASCSHDRTARVWSIDRIQPLRIAAGHLSDVDCVRWHANSNYIATGSSDKTVRLWDV
VSGDCVRIFVGHRSMILSLAMSPDGRYMASGDEDGAIMMWDLASGRCVTPLMGHTSCVWS
LAFSCEGTLLASGSADSTVKLWDVTTSTKVPKTEEKSGNPNRLRSLKTLPTKSTPVYTVQ
VLLEFYFIFPFLFSSPEGVK
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcacgcttgacggatttcgtgacgacgttcctgaaaaagaagggcttcaac
gaggccgagactgcttttagagctgaacttcaacgcaagaacaataacagctccaacaac
aattccatcgacgtactcaacgatcccgaactctccaagttctttcgctccttctccgaa
tcagaggatggtcctgcacgataccaggatgaatatagcaaactgaggtcatggacttat
agctccttggatctgtacaagcatgaattgcttcatgtgctctatccagtgtttatccac
tgtttcatggatctggtggctaaaaagcatatccaagaggcaagaacctttttcaatagc
tttcgtgaagaccatgaaatgctacacttacgagaccttcagaagttggaaggggttctt
actccctctcatctggaggagatggaatttgctcattctctaaggcatagcaaagtcaac
attaagatatgtcagtactcctatgagcttctgctgcagtatctacacaagacacaatgt
actaaaatgcttgggatcatcaatgaacgtattaactttgaagtttctccgggacagccc
agctcaatttccgatgatgctgagatagttacacttattggaagcaaccaggatgcagct
aataaaataaatcaaaaggaagtacactgggggttgcttgaagattctttagaaagccgc
ttggagaaaacaggaggtttactatcagattctgaaaaagcagaaggagaaaacaaagag
ggggaggtagatgagaacaagaaaagatcagtagaaggtggaaagcaaggcacttcaatg
aaaaagttgaagaaggacaaagctatcaacgcaacagcaaaaacatcacgtccagaggct
aacactgtgccagtggccccacgggtgaaatcggagcttgctttgcccgtaatgccagtt
gaggtggaacagtcttttcttgaagacttgagaaaccgtgtacagttgagcagtgttgca
ttgccatcagtctgcttttatacatttatcaacacacataacggtttaaattgtgcatcg
atatcacatgatggatccttggttgctggtggattctcagactcatcgttgaaggtttgg
gatatggcaaagcttgggcaacaaactagaagtttgttggtgtcagccgtttcgcagggt
gaaaatgatactacagcaaaggaagatactttaggggcaaatggtagcaaaagatcttat
acattatttcagggtcattcagggccagtatattctgccagttttagtcctcttggggat
tatattctttcctgctcagcagacgcaacaattcgattatggagcacaaaactaaatgcg
aatcttgtttgctacaagggtcacaactatcctgtttgggacgttcagttttctccatta
ggacattattttgctagctgttcccatgatcgaacagcaagggtttggtctatagataga
atacagcctttacgaatagcggcagggcatctgtctgatgttgactgtgtccgatggcat
gccaattccaactatattgcaactggttctagtgacaaaacagttcgattatgggatgtt
gtgagcggggactgtgtccggatttttgttggtcatagaagtatgattctgtccttggca
atgtcacctgatggtcgctatatggcatccggcgatgaagatggtgctattatgatgtgg
gaccttgcaagtggtcgttgtgtcacgccactgatgggtcacacctcatgtgtgtggtca
cttgcgttcagttgtgaaggtacgcttcttgcatctggatctgctgatagcaccgtaaaa
ttatgggatgtcactactagcacaaaggtgcctaagactgaagaaaaaagtggaaatccc
aacagactcagatcgttgaaaactctgcctactaagtcgacaccagtctatactgtgcag
gtattgctagaattttatttcattttcccttttcttttttcttctccagaaggcgtaaaa
tga
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