Pistacia vera (pistachio): 116138325
Help
Entry
116138325 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03013
Nucleocytoplasmic transport
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116138325
03015 mRNA surveillance pathway
116138325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116138325
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116138325
5.6.2.5 RNA 5'-3' helicase
116138325
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116138325
mRNA cycle factors
Common to processing body (P body) and stress granule
116138325
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
AAA_16
PhoH
SRP54
AAA_32
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
116138325
NCBI-ProteinID:
XP_031279901
LinkDB
All DBs
Position
Unknown
AA seq
1319 aa
AA seq
DB search
MDSQQNNLFETASQPDTGTDAYTFLEFNTQGESDFDAYPEFRSPVSWPTPSDSLSVDPAS
TPTPTTPTTPSDSRGAPPSSDHHHHHNHHHNHHRHSDSLAATSSPSKRGANNNSNNNNSI
STSSSQIVDGLAALSFEETGDDGEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKW
FCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTES
VVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKTCXHVCSSQIPSEQEQLRA
RQISAXQINKVEELWKTNPDATLEDLGKPGVDDEPEPEPVALKYEDAYQYQNVFAPLIKH
EADYDKMMKESQSKDNVTIRWDIGLNKKCIAYFVFPKVLHCFEDNELRLLAVLILSFFFX
DELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSF
DRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVK
SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK
VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKAL
KRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVV
LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVKIPVVSSNRMHPCLSEFP
SXSFYEGTLQNGVTINERQSSGIXFPWPVPNRPXFFYVQMGQEEISASGTSYLNRTEAAN
VEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGR
EKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHY
KEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLYFGGGGPGIVSNDISSSSPNVDRRGGR
GRGSYMPPVPPNGTHKPVVHPAGFPMPRVPLPPFQGGPPSQPYAIPTRGAVHGPVGAVPH
VPQPGSRGFGAGRGNAGAPIGSHLQHQQTSQQSIGTIGSTFNFPSLENPNSQPSVGGPLT
QPGFVNNMPVQGASQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYTV
DYVTQGAQSGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFNDPTQDEA
SQSHFGVTNPNQLQSQGLMNSLYSQPFAHYNTQPLNLQASQQQPQPGQGSQNQKVHYNG
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagcaaaacaacctattcgaaaccgcatcgcagccggatacggggaccgac
gcctacaccttcctcgaattcaacacacaaggcgagtccgatttcgacgcctatccagaa
tttcgttcgccggtatcctggcccacgccttccgattctctctcggtggaccccgcttcc
acgccgactcctaccaccccaacgaccccctccgattcacgcggtgcacctccctcctcc
gatcaccaccaccaccacaatcaccaccacaatcaccaccgacactccgattctcttgcc
gccacatcatccccttctaaaagaggagccaacaataacagtaataacaataatagcatt
agtaccagtagtagtcagattgtggacgggcttgcggcattgagtttcgaggaaacgggt
gatgacggggaggggttcgagtatggaaaagcagatttcacggagcacgcttgtcggtac
tgtggggtctcgaacccggcttgtgttgtacggtgcaatgtcccgtcatgtcgtaagtgg
ttctgtaattccagaggcaacacctccggctcacacatcgtcaatcatctggttcgagca
aaacacaaggaagtctgcctacataaggacagtcctttgggagagactatccttgagtgc
tacaactgtggctgccgaaatgtattccttcttggatttatatcagctaagacggagagt
gttgttgttcttctctgtagggaaccttgcttgaatgtaaatgcattgaaggacatgaat
tgggatctgagtcagtggtgccccttgattgatgataggtgtttcttgcaatggcttgtt
aagacttgctaacatgtttgctcttcacaaatcccatctgagcaggagcagttgagggca
cgtcagatcagtgcttaacaaattaacaaggtagaggaactttggaagacaaatcctgat
gctacccttgaagatcttgggaagcctggtgtggatgatgaacctgaacctgaacctgtg
gccttgaagtatgaagatgcatatcagtatcaaaatgtatttgcaccacttattaagcat
gaagctgactatgataaaatgatgaaagaatcccaaagcaaggacaatgtcactattcga
tgggatattggtcttaacaagaaatgtattgcatattttgtatttccaaaggtgcttcac
tgctttgaagacaatgagttacggttgctagctgttttaattttatcatttttttttcan
gatgagttgaggttgcgttattccggggatgcagctcatccagcatggcagtcagttggg
catgtgatcaagctaactgcacaagaggaggttgcacttgagcttcgtgcgagtcagggg
gttcctgttgatataaatcatgggttcagtgttgattttgtgtggaagagcacaagcttt
gataggatgcagggggcgatgaaaacttttgccgttgatgaaacaagtgttagtgggtat
atttaccaccacttgttgggccatgaagttgaggttcagatggttcgcaatacactgcct
cgtcgttttggtgcacctggtcttccagagctgaatgcatcgcaagtttttgctgtaaag
agtgtccttcagaggcctataagcttaattcaagggccaccgggcacagggaaaactgtc
acttcggcagctattgtataccacatggccaagcagggccaagggcaggttttggtgtgt
gcaccaagcaatgttgctgttgatcagctagctgaaaagataagtgccactgggttaaag
gttgttagactttgtgccaaatcaagggaagctgtgagctctccagttgagcatttaacc
cttcattatcaggttcgtcatcttgacacatccgagaagagtgaacttcacaagttacaa
caattgaaagatgaacaaggggagttgtcgagcagtgatgagaaaaaatacaaagcactc
aagcgggcaacagagagggaaatttcacagagtgctgatgtcatttgttgcacatgtgtt
ggtgcgggagatcctcgattggcaaattttaggttccgccaggtacttattgatgagtct
actcaggcaacagaacctgagtgtcttattcctttggttcttggggcgaaacaggttgtt
cttgttggtgatcattgccaactcggtccagtcattatgtgcaagaaagcagctcgtgct
gggcttgcccagtctctttttgaacgccttgttttacttggtttaaaaccaattagattg
caggtgaagattccagttgttagttcaaaccgcatgcacccttgcctgtctgaatttcct
tctnaaagcttctatgaaggcacactacaaaatggtgtgactattaatgagaggcaatca
tcaggaatcngatttccgtggcctgtgccaaatcgtccantgttcttttatgtacagatg
ggacaagaggagattagtgccagtggaacgtcctatctaaatcggactgaggccgcaaat
gttgagaaaattgtaactactttcttaaggagtggggtggtccctagccagattggggtg
ataacgccatacgagggacagagagcatatattgtgaactatatgtcaaggaatggtgct
ctcagacaacaactgtacaaggaaattgaggttgcaagtgttgattcatttcaaggaaga
gagaaagattacattattttgtcttgtgtgaggagtaatgaacatcagggtattggattc
cttaatgatcctcgtaggctgaatgttgctctaacacgtgctcgatatggtatcgttatt
ctgggaaaccctaaagttctgagcaaacagccactttggaatggcttattgacacactac
aaggagcacgagtgcttggttgaggggcctctaaataacttaaagcaaagtatggttcaa
tttcagaagcccaaaaagatttacaatgatcgaagactttactttggtggtggtgggcct
ggaattgtgtctaatgatatctcatcatccagcccaaatgttgatagaagaggcggtcgt
ggtagggggtcatatatgcctcctgtgccacctaatggtactcataaacctgtagtacat
cctgcaggtttccctatgcctcgtgtgccccttccaccatttcagggtggtcccccttct
caaccatatgctattccaactcgtggagctgtacatggaccagttggagctgttcctcat
gtccctcaaccgggaagtcggggttttggggctgggcgtggtaatgctggcgctccaatc
ggcagtcatctccagcaccagcaaacctctcagcaatcaattggaactattggttctact
ttcaactttccatctcttgagaatccaaatagccaaccatctgtgggtggtcctttgaca
caacctggatttgttaataatatgccagttcaaggggctagtcaaactttccgtgatgga
ttttccatgggaggcatgtctcaggacttcttgggtgatgacttcaaaagccagggatca
catgttccttataatgttgctgacttctctactcaggcttcacaaagtggctatactgtt
gactatgttacacaaggagctcagagtggatttcctggcaacttcttgaaccagaattct
caagctggatattctcgttttggttctgggaatgatttcatgtctcaggactacatggct
cacggatcacaaggtttatttactcaagttggctttaatgaccccacacaagatgaagca
tcgcagagccactttggtgtaaccaatcccaatcaacttcagtctcagggattgatgaat
tctctgtattcccagccctttgcccactacaacactcaaccactaaatttgcaggcttca
cagcagcagccacaaccgggccagggctcacaaaaccagaaagtccactataatggttga
DBGET
integrated database retrieval system
