Pistacia vera (pistachio): 116138827
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Entry
116138827 CDS
T07386
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116138827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116138827
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116138827
mRNA degradation factors
5'-3' decay
Decapping complex
116138827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
116138827
NCBI-ProteinID:
XP_031280345
LinkDB
All DBs
Position
Unknown
AA seq
1064 aa
AA seq
DB search
MVNFRQVAIRHLISVKGPWGELSEPATSSPSVPTAVDSCRIRDGRRTGVRLFRPEYRVEF
GERRFGGDWGDFGERAIKIWEDGKAGALATLKPHGGQPVNSAKFLTAPHQAGHIILVTAG
PLNKEVKIWSSASEEGWLLPGDVESWKCTQTLAFRSSVEAQVEEAFFNQTVALSQAGLLL
FANAKKNAIYSVHLDYGANPMATRMDYIGEFAVTMPILSFTGTTEPPGGHMVKLYCVQTL
AIQQYALDLCQCLPPPTESVEDSDSGVSRDASIADLNGSRLGAFPFPNSAFKPSYSEVAS
ARYPLRSTSLEAAALPENMTSNTDSNPISLARTTSDTNIFCMASPPLPLSPRLSRKLSGL
GNAKNSSELGPSLGEHGGSQSIIDYSVDRQMDTIHANVSGVASYDNDAKNEEKKIATKDI
SRVLNPSIMFKHPTHLITPSEILMSASSSETTNIIEGKDEEEANIQDVVVNSDVANAEVE
VKEVGETRAAHGDEFGSYGETQNHVPENREKLFCSQASDLGIKMARESSAISAENHFVEE
VQEVDGAGLTAQLSRPSVSGESEAQDSTKDVNGKVSGSAVTTIFAQSGTPSAKGKKQTGS
NSQVPDHSSSVPNSAGSFREPGRNSALTSAQADSSQIATMQSTLNQLMTMQKELQKQMLS
VVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFQEENGKNEKLSRDRSQQITNLITN
LINKDLTPVVEKAVKRELAAVGPAIVRTISPSIEKTISSTITESFQRGVSDKAVNMLDRS
VNTRLEATVGRQIQAQFQTSGKIALQDALKSGVEASVFPAFEKSCKAIFEQVDATFQKGM
AEHSTAALQHFESAHSPLALALRDSITSTSSLAQTLSGELADVQRKLISLAAAGGNPSVV
HPLIPQLSNGPLHVLRDKVESSLDPAKELSRLISERKYEEAFIVALQRSDVSIVSWLCSQ
VDLHGILATVPLPLSQGVLLSLLQQLAVDINNDTHRKLAWLTDVAAAINPTDPVITMHAQ
PIFDQVYQRLHHQRNSPTITGAELSSIRLLMHVINSMMMTCKPQ
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggtaaactttcgccaggttgcgatacgccatttgatctctgtcaaggggccgtggggt
gaactctcagaacctgcgacaagctccccgagcgtgcccacggcagtagactcctgccgc
atacgagacggcagaaggacaggggttcgcttgtttcggccggaataccgggtggaattt
ggggaaaggcgatttgggggggattggggtgactttggggaaagggcgataaagatttgg
gaagatggcaaggcaggggcacttgctacattgaaaccacacggtggccaacctgtaaat
tcagccaagttcttgactgctccgcaccaggcgggtcacatcatacttgtcacagcggga
cctttaaataaggaagtgaagatttggtcatcagctagtgaagaaggatggctgcttcct
ggtgatgttgaatcatggaagtgtacccagacattagccttcaggagttctgttgaagct
caggttgaggaggcattctttaaccaaactgtggcattgtctcaagctggtcttctctta
tttgcaaatgcgaagaagaatgcaatttactcagtacacttggactatggtgctaatccc
atggccacccgcatggattacataggagagtttgcagtgaccatgcctattttgagtttt
acaggaacaactgagcctcccggtggacatatggttaagctttattgtgttcaaacactg
gctattcagcagtatgctttggacttgtgccagtgcttgccaccaccaacagaaagtgtg
gaggattcagattcaggtgtctcacgggatgcaagtattgctgacttaaatggaagtaga
cttggcgcatttccattccctaattcagcattcaagccaagttactctgaagttgctagt
gcaagatatcctcttcgttctacttctcttgaggctgccgctttgccagaaaatatgaca
tctaacacggattctaatcctatttctctggcacgaacaactagtgatactaatattttt
tgtatggcgtcacctcctcttccactgagtcctcggttgtctaggaagctttctggtctt
ggaaatgcaaaaaatagctctgagctgggcccctcacttggtgagcatggcggaagccaa
tcaattattgactattcagttgacaggcaaatggacaccattcatgcaaatgtatctggt
gtagcttcctatgataatgatgcaaagaatgaagaaaagaaaattgcaacaaaagatata
tccagggtgctgaatccatctatcatgttcaaacatccgactcatttgataactccttct
gagatcttaatgtcagcttcatcttctgaaactaccaatattattgagggcaaggatgag
gaagaggcaaatattcaagatgtggtcgtcaatagtgatgtggctaatgctgaagtggag
gttaaagaagtgggtgaaacgagagctgctcatggtgatgaatttggttcctatggagaa
actcaaaaccatgttccagaaaacagagaaaagctgttttgctcccaggcttcagatctt
ggaatcaagatggccagagagtcttctgcaatatcagcagaaaatcattttgtggaagag
gtgcaggaagttgatggtgctggcttaacagcccaactttcccgaccttctgttagtggt
gagtcagaagcccaggactcgacaaaagatgttaatggaaaggtttcagggtcagctgtg
actacaatatttgcacaatctggaacaccaagcgccaaggggaaaaagcagacaggaagc
aattctcaagtgccagatcattcttcaagtgttcctaactcagctggttctttccgtgaa
cctggtaggaattcagctctcacctctgcacaagctgattcttctcaaattgcaactatg
cagagtacgcttaatcagctaatgaccatgcaaaaggaactgcagaagcagatgttgagc
gtggtgacccttcctgtaacaaaagaaggtagaagactggaggcatctctaggaaggggg
attgagaaggctgtcaaggccagcactgatgcattgtgggctcgtttccaagaggagaat
gggaaaaatgagaaattatcgcgagaccgctcacaacaaataactaatttaatcactaac
ttaattaacaaggacttgacccctgtagtagaaaaagcagtgaagagggaattggctgca
gttggaccagccattgttcgcaccatctctcccagtattgagaaaactatttcttcaact
attacagagtccttccagagaggagtcagtgacaaggcagtgaatatgctggacaggtca
gttaatacaagacttgaagctacagttggtaggcaaatccaagcacaatttcaaacttct
ggcaagatagctctccaggatgctttgaagtccggtgtagaagcttcagtgttccctgcc
tttgagaagtcatgcaaagctatttttgagcaagtagacgctacctttcagaaaggaatg
gctgaacattcaactgcagctctgcagcattttgaatctgcacattctcccttggctcta
gctttaagggattcaattacttctacttcgtcactggcccaaactttaagtggagaattg
gcagatgttcagcgtaaacttataagtcttgcagctgcaggaggaaacccaagtgttgta
catcccttgattccccaactgagcaatggacctttgcatgttctccgtgataaggttgaa
tcatctttagaccccgcaaaagaactatccagattgatatctgagcgcaaatatgaagaa
gctttcattgttgccctacaaagaagtgatgtgtctattgtgtcttggctatgttcacag
gttgatctacacgggattctggctacggtgcctctccctttgagccaaggagtattgctc
tctcttctgcagcagttggccgttgatatcaacaatgacacacaccgtaaacttgcatgg
ctaacagatgtggctgccgccataaacccaacagatccagtgatcacaatgcatgcacaa
cccatctttgatcaagtctatcagagactgcaccatcaacgtaactcaccaacaatcacc
ggcgctgaactttcaagtatccgtcttctcatgcatgtcatcaactccatgatgatgacc
tgtaaacctcagtga
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