Pistacia vera (pistachio): 116138866
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Entry
116138866 CDS
T07386
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116138866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116138866
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116138866
mRNA degradation factors
5'-3' decay
Decapping complex
116138866
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_HPS5
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
116138866
NCBI-ProteinID:
XP_031280391
LinkDB
All DBs
Position
Unknown
AA seq
1320 aa
AA seq
DB search
MASPKTPQPQFDMHSFFPPYPPSPSSSATTSTATSSFFPYPPLSPEPHANMHPHRFPPYP
SPPPLNAGTQILALLNNNSNTNNTNNSSINNFGSSIIIANNSCQRMAKGRHVSGDCVAYD
VDVRVEGEREPMQLEVTPITKYGSDPELVLGRQIAVNTHYIVYGLKGGNVRVLNLNTASR
ALFRGHAKRVTDMVFFADDVHLLATVSVEGRVYVWKICEGPDEQDKPQITGDVVFAIQFL
GESKGDYVHPRLCWHCNKQDVLVVATGKCVLRIDTAKADKGEGFSAEMPRRCSVDRLIDG
VQLVGKHDGEVTDISFCQWTITRLVSASTDGTIKIWEDGKAGALATLKPHGGQPVNSAKF
LTAPHQAGHIILVTAGPLNKEVKIWSSASEEGWLLPGDVESWKCTQTLAFRSSVEAQVEE
AFFNQTVALSQAGLLLFANAKKNAIYSVHLDYGANPMATRMDYIGEFAVTMPILSFTGTT
EPPGGHMVKLYCVQTLAIQQYALDLCQCLPPPTESVEDSDSGVSRDASIADLNGSRLGAF
PFPNSAFKPSYSEVASARYPLRSTSLEAAALPENMTSNTDSNPISLARTTSDTNIFCMAS
PPLPLSPRLSRKLSGLGNAKNSSELGPSLGEHGGSQSIIDYSVDRQMDTIHANVSGVASY
DNDAKNEEKKIATKDISRVLNPSIMFKHPTHLITPSEILMSASSSETTNIIEGKDEEEAN
IQDVVVNSDVANAEVEVKEVGETRAAHGDEFGSYGETQNHVPENREKLFCSQASDLGIKM
ARESSAISAENHFVEELQEVDGAGLTAQLSQPSVSGESEAQDSTKDVNGKVSGSAVTAIF
AQSGTPSAKGKKQTGSNSQVPDHSSSVPNSAGSFREPGRNSTLTSAQADSSQIATMQSTL
NQLMTMQKELQKQMLSVVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFQEENGKNE
KLSRDRSQQITNLITNLINKDLTPVVEKAVKRELAAVGPAIVRTISPSIEKTISSTITES
FQRGVSDKAVNMLDRSVNTRLEATVGRQIQAQFQTSGKIALQDALKSGVEASVFPAFEKS
CKAIFEQVDATFQKGMAEHSTAALQHFESAHSPLALALRDSITSTSSLAQTLSGELADVQ
RKLISLAAAGGNPSVVHPLIPQLSNGPLHVLRDKVESSLDPAKELSRLISERKYEEAFIV
ALQRSDVSIVSWLCSQVDLHGILATVPLPLSQGVLLSLLQQLAVDINNDTHRKLAWLTDV
AAAINPTDPVITMHAQPIFDQVYQRLHHQRNSPTITGAELSSIRLLMHVINSMMMTCKPQ
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggcttctccgaaaacccctcaacctcaatttgacatgcacagtttcttccctccttat
cctccgtccccctcctcctccgccaccacctccactgcaacctcctccttcttcccttac
cctccgctatccccggagccccacgctaacatgcacccccaccgcttccccccttatcct
tcaccccctcctctcaacgccggcacccaaattctcgctcttctcaacaataacagcaac
accaacaacactaacaatagtagtatcaacaattttggtagtagtattattattgctaat
aattcttgtcagagaatggccaaaggacggcatgtttcgggtgattgcgtggcttatgac
gtggacgttcgtgtcgaaggcgagagagaaccgatgcaactggaggtgactccgattact
aagtacgggtcggatcctgaacttgttctcggtagacaaatcgctgttaatacacattac
attgtgtatgggctcaaaggtggaaatgttagggttttgaatctcaacactgcttcgcgc
gctttgtttcgtggccacgctaagagagtcacggatatggtgtttttcgcggatgatgtg
caccttttggctactgtgagtgtggaggggcgagtttatgtttggaagatatgtgaaggt
ccagatgaacaagataagccacaaattacaggcgacgttgtttttgctattcagttttta
ggagagagtaaaggagattatgtgcatcctaggctttgttggcattgcaacaaacaagat
gttttggtggtggcgacggggaagtgcgtgttgagaattgacactgcaaaagctgacaag
ggtgaaggtttttcagccgagatgcctcgtcgatgttctgttgacaggctgattgatgga
gttcagttagttggtaaacatgatggagaagtaactgatatatctttttgtcagtggaca
atcacccgcttggtttctgcttctactgatggcacgataaagatttgggaagatggcaag
gcaggggcacttgctacattgaaaccacacggtggccaacctgtaaattcagccaagttc
ttgactgctccgcaccaggcgggtcacatcatacttgtcacagcgggacctttaaataag
gaagtgaagatttggtcatcagctagtgaagaaggatggctgcttcctggtgatgttgaa
tcatggaagtgtacccagacattagccttcaggagttctgttgaagctcaggttgaggag
gcattctttaaccaaactgtggcattgtctcaagctggtcttctcttatttgcaaatgcg
aagaagaatgcaatttactcagtacacttggactatggtgctaatcccatggccacccgc
atggattacataggagagtttgcagtgaccatgcctattttgagttttacaggaacaact
gagcctcccggtggacatatggttaagctttattgtgttcaaacactggctattcagcag
tatgctttggacttgtgccagtgcttgccaccaccaacagaaagtgtggaggattcagat
tcaggtgtctcacgggatgcaagtattgctgacttaaatggaagtagacttggcgcattt
ccattccctaattcagcattcaagccaagttactctgaagttgctagtgcaagatatcct
cttcgttctacttctcttgaggctgccgctttgccagaaaatatgacatctaacacggat
tctaatcctatttctctggcacgaacaactagtgatactaatattttttgtatggcgtca
cctcctcttccactgagtcctcggttgtctaggaagctttctggtcttggaaatgcaaaa
aatagctctgagctgggcccctcacttggtgagcatggcggaagccaatcaattattgac
tattcagttgacaggcaaatggacaccattcatgcaaatgtatctggtgtagcttcctat
gataatgatgcaaagaatgaagaaaagaaaattgcaacaaaagatatatccagggtgctg
aatccatctatcatgttcaaacatccgactcatttgataactccttctgagatcttaatg
tcagcttcatcttctgaaactaccaatattattgagggcaaggatgaggaagaggcaaat
attcaagatgtggtcgtcaatagtgatgtggctaatgctgaagtggaggttaaagaagtg
ggtgaaacgagagctgctcatggtgatgaatttggttcctatggagaaactcaaaaccat
gttccagaaaacagagaaaagctgttttgctcccaggcttcagatcttggaatcaagatg
gccagagagtcttctgcaatatcagcagaaaatcattttgtggaagagttgcaggaagtt
gatggtgctggcttaacagcccaactttcccaaccttctgttagtggtgagtcagaagcc
caggactccacaaaagatgttaatggaaaggtttcagggtcagctgtgactgcaatattt
gcacaatctggaacaccaagcgccaaggggaaaaagcagacaggaagcaattctcaagtg
ccagatcattcttcaagtgttcctaactcagctggttctttccgtgaacctgggaggaat
tcaactctcacctctgcacaagctgattcttctcaaattgcaactatgcagagtacgctt
aatcagctaatgaccatgcaaaaggaactgcagaagcagatgttgagcgtggtgaccctt
cctgtaacaaaagaaggtagaagactggaggcatctctaggaagggggattgagaaggct
gtcaaggccagcactgatgcattgtgggctcgtttccaagaggagaatgggaaaaatgag
aaattatcgcgagaccgctcacaacaaataactaatttaatcactaacttaattaacaag
gacttgacccctgtagtagaaaaagcagtgaagagggaattggctgcagttggaccagcc
attgttcgcaccatctctcccagtattgagaaaactatttcttcaactattacagagtcc
ttccagagaggagtcagtgacaaggcagtgaatatgctggacaggtcagttaatacaaga
cttgaagctacagttggtaggcaaatccaagcacaatttcaaacttctggcaagatagct
ctccaggatgctttgaagtccggtgtagaagcttcagtgttccctgcctttgagaagtca
tgcaaagctatttttgagcaagtagacgctacctttcagaaaggaatggctgaacattca
actgcagctctgcagcattttgaatctgcacattctcccttggctctagctttaagggat
tcaattacttctacttcgtcactggcccaaactttaagtggagaattggcagatgttcag
cgtaaacttataagtcttgcagctgcaggaggaaacccaagtgttgtacatcccttgatt
ccccaactgagcaatggacctttgcatgttctccgtgataaggttgaatcatctttagac
cccgcaaaagaactatccagattgatatctgagcgcaaatatgaagaagctttcattgtt
gccctacaaagaagtgatgtgtctattgtgtcttggctatgttcacaggttgatctacac
gggattctggctacggtgcctctccctttgagccaaggagtattgctctctcttctgcag
cagttggccgttgatatcaacaatgacacacaccgtaaacttgcatggctaacagatgtg
gctgccgccataaacccaacagatccagtgatcacaatgcatgcacaacccatctttgat
caagtctatcagagactgcaccatcaacgtaactcaccaacaatcaccggcgctgaactt
tcaagtatccgtcttctcatgcatgtcatcaactccatgatgatgacctgtaaacctcag
tga
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