Pistacia vera (pistachio): 116139016
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Entry
116139016 CDS
T07386
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116139016
09123 Folding, sorting and degradation
03018 RNA degradation
116139016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116139016
03041 Spliceosome [BR:
pvy03041
]
116139016
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116139016
mRNA degradation factors
5'-3' decay
Lsm complex
116139016
Spliceosome [BR:
pvy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116139016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
116139016
NCBI-ProteinID:
XP_031280556
LinkDB
All DBs
Position
Unknown
AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGPGGRQTKGIGRGLDD
GGAKGPGGGRGRGGPGGKTGGSRGGGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctctgcttaaaactgcccagggtcatcctatgttggtagagctaaaa
aacggcgagacttacaatgggcatttggtcaattgtgatacttggatgaacatccatctc
cgtgaagtaatttgtacttccaaggatggagataggttttggagaatgcctgaatgctac
atccgcggtaatacaattaagtatcttcgagttcctgatgaggtgattgataaagttcag
gaagaaaccaagagccgctctgatcgtaaaccacctggagtagggcgtggcagaggaaga
ggtagagaggatggtcctggtgggaggcaaacgaaaggaattggtcgtgggctagatgat
ggaggtgctaagggtcctggtgggggccgaggcaggggcggacctggtggaaagactggt
ggtagcagaggtggaggtcgaggccgaggttga
DBGET
integrated database retrieval system
