Pistacia vera (pistachio): 116139027
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Entry
116139027 CDS
T07386
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03430
Mismatch repair
pvy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116139027
03460 Fanconi anemia pathway
116139027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116139027
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
116139027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
116139027
NCBI-ProteinID:
XP_031280569
LinkDB
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Position
Unknown
AA seq
901 aa
AA seq
DB search
MESETLIKSPIIRPINKGVVHRICAGQVILDLSSAVKELVENSLDAGATSIEIALKEYGA
ECFQVIDNGCGISPNNFKVLALKHHTSKLADFPDLQSLTTFGFRGEALSSLCALGNLTVE
TRTKNESVATHLTFDHSGLLTAEKKTARQIGTTITVKKLFSNLPVRSKEFSRNIRKEYGK
LISLLNAYALIAKGVRLVCTNTTGRNVKSVVLKTQGTGSLRDNIITVFGMNTFSCLEPVT
VCVSDNCKVEGFLSKPGQGSGRNLGDRQYFFVNGRPVDMPKVSKLVNELYKGANSRQYPI
AIMNFTVPTRACDVNVTPDKRKIFFSDECSILHVLREGLQQIYSPSNASYSVNKVEEHSR
EADSFEFCSTREKSPVMLEQSSADGIKSKEVQKKQASGSNTHLEIKIDTQRSQAIEGSVH
CTEENLVVKDFTLRPHDNKKGDIFPKYSPSSSRVIEKIVAENRESNSRSSCIQSSINKFI
TVSKRKYESIGTTLSEVPLLRNQSLQCQLKINSAAGTNSPVKYNSGDDSAEMNKNEPFKC
LRTDKVFKEIENPLFSEANADGRPGEDLVTQQKVMPVVISPSSEGLQKTSGLSAAASPLK
FSGSLLDAPVPSSGLDICSTLQFSFEELRKRRKQRLSRTQSSSFLSGNVKMRRCYAAATL
ELSHPENEERKARALAAATTELERLFRKEDFGRMKVIGQFNLGFIIGKVDNDLFIVDQHA
ADEKYNFERLSESTILNQQPLLQPLRLELTPEEEIVASMHMDTIRKNGFALEEDPQALTG
QRFKLKAVPFSKNITFGVEDVKDLISSLSDSEGECSIISAYKMDSADSVCPSRVRAMLAS
RACRSSVMIGDALGRNEMQKILGHLVGLKSPWNCPHGRPTMRHLVDLATIRKTYNENDAN
C
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagaaaccttaattaaatctccgatcattagacccataaataaaggtgtggtt
cacagaatctgtgccggtcaagtcattttggacctctcatctgcggttaaggagctagtt
gaaaacagcttggacgccggtgcaaccagcatcgaaatcgcattgaaagaatacggcgca
gagtgtttccaggttatcgacaatggctgtggcatttcacccaataatttcaaggttcta
gcgcttaagcatcatacttccaaattggcggattttccagatcttcagtctctgacaaca
tttggttttagaggagaggcactgagttcactttgtgcattaggaaatctgactgttgaa
acaagaacgaaaaatgagtcagttgcaacacacttgacttttgaccattcaggtctacta
acagctgaaaagaaaactgcacgtcaaattggtaccaccatcaccgttaagaaattattc
tcaaatttacctgttcgaagcaaagaatttagtcgcaacatacgtaaggaatatggaaag
ctaatttctttgttaaatgcctatgcacttattgctaaaggagttcggttggtctgcacc
aacaccaccggaagaaatgtgaaatctgtggtacttaaaacacaaggaactggttccctt
agagataacatcataacagtgtttggaatgaacactttcagctgcttagagcctgtgact
gtatgtgtatcagacaattgcaaagttgaaggtttcctttccaagcccggacagggtagc
ggacgcaatttgggagataggcaatatttttttgtaaatggccgacctgtagatatgcct
aaagtgagcaagctagtgaatgaattatataaaggtgcaaactcacgacaatatcccatt
gcgattatgaatttcactgtccctactagagcatgtgatgttaatgtgactcctgataaa
cgaaaaatattcttttctgatgaatgctccatattacatgttctaagagagggtttacag
cagatctattccccaagtaatgccagttattctgttaataaagttgaagagcattcaagg
gaagcagatagctttgagttttgttctactcgcgaaaaatctcctgtgatgttagaacag
tcatctgcagatggaattaagtctaaagaagttcagaagaaacaagcttcagggagcaat
actcatttagaaattaaaattgatactcagcgctcacaagccatagaaggatcagtccac
tgtaccgaggaaaatttagtggtgaaggacttcactcttagaccacacgacaataagaag
ggtgatatttttccaaagtattctccatcatcttcaagagtgattgagaaaatagttgct
gaaaatagagagtcaaatagtcgctcaagctgtattcagtcatcaattaacaaatttata
actgtgagtaagaggaagtatgaatctattggtacaacattatctgaagtgcctctccta
agaaaccagagccttcagtgtcaattgaagatcaattctgctgcgggtacaaattcccca
gttaagtataactcgggtgatgattctgctgagatgaacaagaatgagccgttcaagtgc
cttagaacagacaaggttttcaaggaaattgaaaatccccttttttctgaagccaatgct
gatggaagacctggagaggacttagtcactcaacaaaaagtcatgcctgttgttatttca
ccatctagtgagggtctccaaaaaacttctggtctttcagctgcagcttctcctttaaag
ttttctggatcactgctggatgctccggtgccttcttctggactggatatatgttctacc
ttgcaatttagttttgaagaattaaggaaaaggaggaagcaaaggctgtctagaacacaa
tctagcagttttctgtctggaaatgtaaagatgagaaggtgctatgctgctgcaacacta
gagctttctcacccagaaaatgaggagcgtaaagcaagggctttagctgctgcgactact
gaactggaaagactctttagaaaagaagactttggtagaatgaaggtgattggacaattc
aatcttggatttattattgggaaggtagacaatgatttgtttattgtggatcagcatgct
gctgatgagaagtacaattttgagcgtttgtctgaatcgaccatcttgaatcagcagcct
ttgcttcaaccattgaggttggagttaactcctgaagaagaaattgttgcttcaatgcat
atggacacaattaggaaaaatggatttgcattggaagaggacccacaagctctgacaggg
caacgttttaaactcaaagctgttcccttcagtaaaaacataacttttggagttgaagat
gtgaaggacctgatttcatctctttctgatagtgaaggggaatgttcaattatcagtgct
tacaaaatggacagtgctgattctgtttgcccatctagagttcgtgcaatgctggcttcc
cgtgcatgcagatcatctgttatgattggagatgcgctaggaagaaatgagatgcagaag
atccttgggcatctggtaggcctgaagtctccttggaattgcccacatggccgtccaacc
atgcgtcatttggttgatttggcaaccatccgcaaaacttacaatgaaaatgatgcaaac
tgttga
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